JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CACUL1_chr10_118671411_118759970	0/0	t0076	9927	1	0	0	0	1	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0077	9925	1	0	0	1	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0078	9927	1	0	1	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0079	9922	1	1	0	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0080	9922	1	1	0	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0081	9921	1	0	1	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0082	9921	1	0	0	1	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0083	9923	1	1	0	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0084	9925	1	1	0	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0085	9934	1	0	0	1	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0086	9932	1	0	0	1	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0087	9932	1	0	0	1	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0088	9932	1	0	1	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0089	9932	1	0	0	1	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0090	9930	1	0	0	1	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0091	9930	1	1	0	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0092	9930	1	1	0	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0093	9934	1	0	1	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0094	9933	1	0	0	1	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0095	9926	1	1	0	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0096	9927	1	1	0	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0097	9921	1	1	0	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0098	9932	1	1	0	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0099	9924	1	0	1	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0100	9932	1	0	0	1	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0101	9926	1	0	1	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0102	10010	1	0	1	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0103	10011	1	0	1	0	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	t0104	9931	1	0	0	1	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACYBP_chr1_174994947_175017027	1/0	t0001	2183	102	2	30	59	4	6	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	t0002	2184	62	5	5	44	2	6	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/1	t0003	2183	57	0	4	42	2	8	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	t0004	2175	55	10	17	16	8	4	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	t0005	2183	26	2	10	3	2	9	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	t0006	2183	17	16	1	0	0	0	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	t0007	2182	16	16	0	0	0	0	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	t0008	2183	9	0	0	9	0	0	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	t0009	2182	9	9	0	0	0	0	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	t0010	2184	7	5	2	0	0	0	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	t0011	2183	6	4	2	0	0	0	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	t0012	2183	5	5	0	0	0	0	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	t0013	2184	4	0	3	1	0	0	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	t0014	2183	4	0	0	4	0	0	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	t0015	2183	4	4	0	0	0	0	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	t0016	2185	4	4	0	0	0	0	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	t0017	2182	3	0	0	0	0	3	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	t0018	2182	3	3	0	0	0	0	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	t0019	2183	2	2	0	0	0	0	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	t0020	2182	2	2	0	0	0	0	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	t0021	2184	2	0	0	2	0	0	copy fasta	CACYBP	chr1	174994947	175017027