JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CACYBP_chr1_174994947_175017027	0/0	t0022	2185	2	2	0	0	0	0	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	t0023	2175	1	0	0	0	0	1	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	t0024	2183	1	0	1	0	0	0	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	t0025	2183	1	0	0	1	0	0	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	t0026	2184	1	0	0	1	0	0	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	t0027	2182	1	0	0	1	0	0	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	t0028	2182	1	0	0	1	0	0	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	t0029	2183	1	0	0	0	0	1	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	t0030	2183	1	1	0	0	0	0	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	t0031	2183	1	1	0	0	0	0	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	t0032	2184	1	0	1	0	0	0	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	t0033	2186	1	1	0	0	0	0	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	t0034	2175	1	1	0	0	0	0	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	t0035	2184	1	0	0	1	0	0	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	t0036	2184	1	0	0	1	0	0	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	t0037	2184	1	1	0	0	0	0	copy fasta	CACYBP	chr1	174994947	175017027
CADM1_chr11_115164236_115509415	0/0	t0001	7250	21	5	2	11	0	3	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0002	7251	20	0	7	5	0	8	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0003	7250	11	9	1	0	1	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0004	7255	9	0	1	6	0	2	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0005	7251	6	0	4	0	1	1	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0006	7256	5	2	1	2	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0007	7248	4	3	1	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0008	7251	4	0	3	0	0	1	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0009	7247	4	4	0	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0010	7252	4	0	0	2	0	2	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0011	7252	4	4	0	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0012	7257	4	1	1	1	0	1	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0013	7252	3	0	1	2	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0014	7250	3	3	0	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0015	7258	3	3	0	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0016	7258	2	0	1	1	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0017	7257	2	0	2	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0018	7248	2	2	0	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0019	7258	2	2	0	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0020	7254	2	0	2	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0021	7241	2	2	0	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0022	7250	2	1	1	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0023	7263	1	0	1	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0024	7258	1	0	1	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0025	7251	1	0	0	1	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0026	7249	1	1	0	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0027	7249	1	1	0	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0028	7248	1	1	0	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0029	7247	1	1	0	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0030	7247	1	1	0	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0031	7247	1	1	0	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0032	7251	1	1	0	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0033	7251	1	1	0	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0034	7261	1	0	1	0	0	0	copy fasta	CADM1	chr11	115164236	115509415