JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CADM1_chr11_115164236_115509415	0/0	t0035	7260	1	1	0	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0036	7252	1	0	0	1	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0037	7252	1	1	0	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0038	7251	1	1	0	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0039	7257	1	1	0	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0040	7263	1	0	0	1	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0041	7252	1	0	0	1	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0042	7252	1	0	0	0	0	1	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0043	7251	1	0	0	1	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0044	7253	1	0	0	1	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0045	7261	1	1	0	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0046	7261	1	1	0	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0047	7259	1	1	0	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0048	7252	1	1	0	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0049	7256	1	1	0	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0050	7255	1	1	0	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0051	7259	1	1	0	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0052	7255	1	0	1	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0053	7255	1	0	1	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0054	7254	1	0	0	0	0	1	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0055	7252	1	0	0	1	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0056	7248	1	1	0	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0057	7250	1	1	0	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0058	7258	1	1	0	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0059	7250	1	1	0	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0060	7250	1	1	0	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0061	7255	1	0	1	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0062	7261	1	0	0	1	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0063	7250	1	0	1	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0064	7250	1	0	0	1	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0065	7249	1	1	0	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0066	7251	1	0	1	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	t0067	7250	1	0	0	1	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM2_chr3_84953989_86079429	0/0	t0001	8268	19	3	5	7	0	4	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0002	8268	18	13	0	0	3	2	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0003	8266	16	0	4	5	2	5	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0004	8268	6	0	0	1	0	5	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0005	8268	6	0	2	4	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0006	8268	5	5	0	0	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0007	8267	4	3	0	0	0	1	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0008	8268	4	4	0	0	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0009	8268	4	1	0	3	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0010	8268	3	0	0	3	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0011	8267	3	3	0	0	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0012	8268	3	0	1	2	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0013	8266	3	0	2	0	0	1	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0014	8269	3	2	1	0	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0015	8266	3	3	0	0	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0016	8267	2	2	0	0	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0017	8268	2	0	0	2	0	0	copy fasta	CADM2	chr3	84953989	86079429