JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CADM2_chr3_84953989_86079429	0/0	t0018	8268	2	0	0	2	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0019	8266	2	0	0	0	0	2	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0020	8268	2	1	1	0	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0021	8268	2	0	1	0	0	1	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0022	8272	2	0	0	0	2	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0023	8268	2	2	0	0	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0024	8268	2	2	0	0	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0025	8266	1	1	0	0	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0026	8267	1	1	0	0	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0027	8268	1	1	0	0	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0028	8268	1	0	0	0	0	1	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0029	8268	1	1	0	0	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0030	8269	1	0	1	0	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0031	8268	1	0	0	0	1	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0032	8268	1	0	1	0	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0033	8268	1	0	0	0	1	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0034	8267	1	1	0	0	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0035	8268	1	0	0	1	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0036	8268	1	1	0	0	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0037	8269	1	1	0	0	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0038	8268	1	1	0	0	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0039	8268	1	0	0	0	0	1	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0040	8268	1	1	0	0	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0041	8267	1	0	1	0	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0042	8268	1	1	0	0	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0043	8268	1	0	0	0	0	1	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0044	8268	1	0	0	1	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0045	8266	1	0	0	0	1	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0046	8268	1	1	0	0	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0047	8268	1	0	0	1	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0048	8269	1	1	0	0	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0049	8267	1	1	0	0	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0050	8266	1	1	0	0	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0051	8267	1	1	0	0	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	t0052	8268	1	1	0	0	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM3_chr1_159166615_159208313	1/0	t0001	2543	95	26	14	38	4	12	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	t0002	2543	87	0	12	68	1	6	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/1	t0003	2543	69	1	21	28	8	10	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	t0004	2541	25	25	0	0	0	0	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	t0005	2544	19	0	1	16	0	2	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	t0006	2543	14	1	7	2	2	2	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	t0007	2544	13	4	2	7	0	0	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	t0008	2544	10	1	1	8	0	0	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	t0009	2543	7	7	0	0	0	0	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	t0010	2543	6	0	6	0	0	0	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	t0011	2543	4	0	1	3	0	0	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	t0012	2542	4	4	0	0	0	0	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	t0013	2541	3	3	0	0	0	0	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	t0014	2544	2	0	0	2	0	0	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	t0015	2544	2	0	2	0	0	0	copy fasta	CADM3	chr1	159166615	159208313