JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CADM3_chr1_159166615_159208313	0/0	t0016	2544	1	0	0	1	0	0	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	t0017	2543	1	0	0	1	0	0	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	t0018	2543	1	0	0	1	0	0	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	t0019	2544	1	0	0	1	0	0	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	t0020	2543	1	0	0	1	0	0	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	t0021	2541	1	1	0	0	0	0	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	t0022	2543	1	0	1	0	0	0	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	t0023	2542	1	0	1	0	0	0	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	t0024	2544	1	0	1	0	0	0	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	t0025	2544	1	1	0	0	0	0	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	t0026	2543	1	1	0	0	0	0	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	t0027	2541	1	1	0	0	0	0	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	t0028	2541	1	1	0	0	0	0	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	t0029	2543	1	1	0	0	0	0	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	t0030	2543	1	0	0	0	1	0	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	t0031	2543	1	0	0	1	0	0	copy fasta	CADM3	chr1	159166615	159208313
CADM4_chr19_43617368_43644850	0/0	t0001	1024	193	64	16	88	8	17	copy fasta	CADM4	chr19	43617368	43644850
CADM4_chr19_43617368_43644850	0/0	t0002	1023	91	15	13	56	0	7	copy fasta	CADM4	chr19	43617368	43644850
CADM4_chr19_43617368_43644850	1/1	t0003	1023	84	5	23	37	4	13	copy fasta	CADM4	chr19	43617368	43644850
CADM4_chr19_43617368_43644850	0/0	t0004	1024	41	1	17	15	4	4	copy fasta	CADM4	chr19	43617368	43644850
CADM4_chr19_43617368_43644850	0/0	t0005	1027	4	2	2	0	0	0	copy fasta	CADM4	chr19	43617368	43644850
CADM4_chr19_43617368_43644850	0/0	t0006	1023	3	0	0	2	0	1	copy fasta	CADM4	chr19	43617368	43644850
CADM4_chr19_43617368_43644850	0/0	t0007	1024	2	0	2	0	0	0	copy fasta	CADM4	chr19	43617368	43644850
CADM4_chr19_43617368_43644850	0/0	t0008	1024	1	0	0	0	0	1	copy fasta	CADM4	chr19	43617368	43644850
CADM4_chr19_43617368_43644850	0/0	t0009	1023	1	0	0	1	0	0	copy fasta	CADM4	chr19	43617368	43644850
CADM4_chr19_43617368_43644850	0/0	t0010	1023	1	0	1	0	0	0	copy fasta	CADM4	chr19	43617368	43644850
CADM4_chr19_43617368_43644850	0/0	t0011	1023	1	0	0	1	0	0	copy fasta	CADM4	chr19	43617368	43644850
CADM4_chr19_43617368_43644850	0/0	t0012	1023	1	0	0	0	0	1	copy fasta	CADM4	chr19	43617368	43644850
CADM4_chr19_43617368_43644850	0/0	t0013	1027	1	1	0	0	0	0	copy fasta	CADM4	chr19	43617368	43644850
CADPS2_chr7_122313411_122891460	1/0	t0001	1878	64	33	12	9	3	6	copy fasta	CADPS2	chr7	122313411	122891460
CADPS2_chr7_122313411_122891460	0/1	t0002	1874	36	10	8	6	2	9	copy fasta	CADPS2	chr7	122313411	122891460
CADPS2_chr7_122313411_122891460	0/0	t0003	1878	13	3	5	3	0	2	copy fasta	CADPS2	chr7	122313411	122891460
CADPS2_chr7_122313411_122891460	0/0	t0004	1874	5	5	0	0	0	0	copy fasta	CADPS2	chr7	122313411	122891460
CADPS2_chr7_122313411_122891460	0/0	t0005	1878	2	0	0	2	0	0	copy fasta	CADPS2	chr7	122313411	122891460
CADPS2_chr7_122313411_122891460	0/0	t0006	1878	1	1	0	0	0	0	copy fasta	CADPS2	chr7	122313411	122891460
CADPS2_chr7_122313411_122891460	0/0	t0007	1878	1	1	0	0	0	0	copy fasta	CADPS2	chr7	122313411	122891460
CADPS2_chr7_122313411_122891460	0/0	t0008	1878	1	1	0	0	0	0	copy fasta	CADPS2	chr7	122313411	122891460
CADPS2_chr7_122313411_122891460	0/0	t0009	1874	1	0	0	0	1	0	copy fasta	CADPS2	chr7	122313411	122891460
CADPS2_chr7_122313411_122891460	0/0	t0010	1874	1	0	0	0	0	1	copy fasta	CADPS2	chr7	122313411	122891460
CADPS2_chr7_122313411_122891460	0/0	t0011	1878	1	0	1	0	0	0	copy fasta	CADPS2	chr7	122313411	122891460
CADPS_chr3_62393348_62880416	0/1	t0001	1446	139	59	35	24	7	13	copy fasta	CADPS	chr3	62393348	62880416
CADPS_chr3_62393348_62880416	0/0	t0002	1446	10	9	0	1	0	0	copy fasta	CADPS	chr3	62393348	62880416
CADPS_chr3_62393348_62880416	0/0	t0003	1446	3	0	2	1	0	0	copy fasta	CADPS	chr3	62393348	62880416
CADPS_chr3_62393348_62880416	1/0	t0004	1446	2	0	0	0	0	1	copy fasta	CADPS	chr3	62393348	62880416
CADPS_chr3_62393348_62880416	0/0	t0005	1446	1	0	0	0	0	1	copy fasta	CADPS	chr3	62393348	62880416
CADPS_chr3_62393348_62880416	0/0	t0006	1446	1	1	0	0	0	0	copy fasta	CADPS	chr3	62393348	62880416
CADPS_chr3_62393348_62880416	0/0	t0007	1446	1	0	0	0	1	0	copy fasta	CADPS	chr3	62393348	62880416
CADPS_chr3_62393348_62880416	0/0	t0008	1446	1	0	1	0	0	0	copy fasta	CADPS	chr3	62393348	62880416
CADPS_chr3_62393348_62880416	0/0	t0009	1446	1	1	0	0	0	0	copy fasta	CADPS	chr3	62393348	62880416
CADPS_chr3_62393348_62880416	0/0	t0010	1446	1	0	0	0	0	1	copy fasta	CADPS	chr3	62393348	62880416