JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CAD_chr2_27212369_27248943	1/1	t0001	609	258	82	66	62	12	34	copy fasta	CAD	chr2	27212369	27248943
CAGE1_chr6_7321659_7394742	1/1	t0001	764	235	73	36	104	4	16	copy fasta	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	t0002	764	116	9	27	62	4	14	copy fasta	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	t0003	764	5	5	0	0	0	0	copy fasta	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	t0004	764	1	0	1	0	0	0	copy fasta	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	t0005	764	1	1	0	0	0	0	copy fasta	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	t0006	764	1	0	0	1	0	0	copy fasta	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	t0007	764	1	0	0	1	0	0	copy fasta	CAGE1	chr6	7321659	7394742
CALB1_chr8_90053608_90087879	1/0	t0001	1748	275	66	40	143	8	17	copy fasta	CALB1	chr8	90053608	90087879
CALB1_chr8_90053608_90087879	0/1	t0002	1748	93	11	20	40	6	15	copy fasta	CALB1	chr8	90053608	90087879
CALB1_chr8_90053608_90087879	0/0	t0003	1748	5	5	0	0	0	0	copy fasta	CALB1	chr8	90053608	90087879
CALB1_chr8_90053608_90087879	0/0	t0004	1748	4	4	0	0	0	0	copy fasta	CALB1	chr8	90053608	90087879
CALB1_chr8_90053608_90087879	0/0	t0005	1748	2	0	0	2	0	0	copy fasta	CALB1	chr8	90053608	90087879
CALB1_chr8_90053608_90087879	0/0	t0006	1748	2	0	0	2	0	0	copy fasta	CALB1	chr8	90053608	90087879
CALB1_chr8_90053608_90087879	0/0	t0007	1748	1	1	0	0	0	0	copy fasta	CALB1	chr8	90053608	90087879
CALB1_chr8_90053608_90087879	0/0	t0008	1748	1	1	0	0	0	0	copy fasta	CALB1	chr8	90053608	90087879
CALB1_chr8_90053608_90087879	0/0	t0009	1748	1	0	0	1	0	0	copy fasta	CALB1	chr8	90053608	90087879
CALB2_chr16_71353723_71395433	0/1	t0001	639	277	64	59	114	8	31	copy fasta	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	1/0	t0002	639	130	13	17	79	6	14	copy fasta	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	t0003	638	16	16	0	0	0	0	copy fasta	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	t0004	639	3	1	0	1	0	1	copy fasta	CALB2	chr16	71353723	71395433
CALCA_chr11_14963501_14977351	1/1	t0001	415	380	91	59	173	14	41	copy fasta	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	t0002	415	2	0	1	0	0	1	copy fasta	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	t0003	415	1	0	0	1	0	0	copy fasta	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	t0004	415	1	1	0	0	0	0	copy fasta	CALCA	chr11	14963501	14977351
CALCB_chr11_15068593_15083637	1/1	t0001	661	308	87	35	147	10	27	copy fasta	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	t0002	661	88	7	24	36	8	13	copy fasta	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	t0003	661	10	0	1	9	0	0	copy fasta	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	t0004	661	4	0	4	0	0	0	copy fasta	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	t0005	661	2	2	0	0	0	0	copy fasta	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	t0006	661	1	1	0	0	0	0	copy fasta	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	t0007	661	1	0	0	1	0	0	copy fasta	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	t0008	661	1	1	0	0	0	0	copy fasta	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	t0009	661	1	0	0	1	0	0	copy fasta	CALCB	chr11	15068593	15083637
CALCOCO1_chr12_53703517_53732452	0/0	t0001	3501	76	6	10	52	1	7	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/1	t0002	3501	57	7	6	35	1	7	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0003	3500	26	0	3	21	1	1	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0004	3500	25	1	10	11	1	2	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	1/0	t0005	3501	24	1	9	8	3	2	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0006	3501	14	3	3	8	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0007	3501	9	1	1	5	0	2	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0008	3501	9	0	0	9	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0009	3500	8	0	3	5	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0010	3501	8	0	0	8	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0011	3501	8	4	0	4	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0012	3501	7	0	2	3	2	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0013	3501	7	0	1	4	1	1	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0014	3501	7	6	1	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0015	3501	4	0	0	0	0	4	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0016	3501	4	0	0	3	0	1	copy fasta	CALCOCO1	chr12	53703517	53732452