JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CALCOCO1_chr12_53703517_53732452	0/0	t0017	3501	3	0	2	0	0	1	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0018	3500	3	0	1	0	0	2	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0019	3501	3	0	0	3	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0020	3500	3	0	0	3	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0021	3500	3	0	2	0	0	1	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0022	3501	3	0	1	0	1	1	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0023	3501	3	1	1	0	0	1	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0024	3501	3	0	2	0	0	1	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0025	3500	3	0	1	0	2	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0026	3501	3	3	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0027	3501	3	3	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0028	3501	3	3	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0029	3501	3	2	0	1	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0030	3500	2	1	1	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0031	3500	2	0	2	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0032	3501	2	0	2	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0033	3501	2	0	2	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0034	3501	2	2	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0035	3501	2	2	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0036	3501	2	2	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0037	3500	2	0	1	0	0	1	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0038	3500	2	2	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0039	3501	2	0	0	2	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0040	3501	2	2	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0041	3501	2	2	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0042	3501	2	1	0	0	0	1	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0043	3501	2	0	0	0	0	2	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0044	3501	2	2	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0045	3501	2	0	0	2	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0046	3501	1	1	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0047	3501	1	0	0	1	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0048	3501	1	1	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0049	3501	1	1	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0050	3501	1	1	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0051	3501	1	0	1	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0052	3500	1	1	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0053	3501	1	0	0	1	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0054	3501	1	0	0	0	0	1	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0055	3500	1	0	1	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0056	3500	1	0	0	1	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0057	3500	1	1	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0058	3501	1	1	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0059	3501	1	0	0	1	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0060	3501	1	0	0	1	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0061	3501	1	0	0	1	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0062	3501	1	1	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0063	3500	1	1	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0064	3501	1	0	0	1	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0065	3501	1	0	1	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0066	3501	1	1	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452