JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CALCOCO1_chr12_53703517_53732452	0/0	t0067	3501	1	0	0	0	0	1	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0068	3501	1	1	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0069	3501	1	1	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0070	3500	1	1	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0071	3500	1	0	0	1	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0072	3500	1	0	1	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0073	3500	1	0	1	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0074	3501	1	0	0	1	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0075	3500	1	0	0	1	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0076	3501	1	1	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0077	3500	1	0	0	0	1	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0078	3501	1	0	0	1	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0079	3501	1	0	0	0	0	1	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0080	3501	1	1	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0081	3501	1	1	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0082	3501	1	0	0	0	0	1	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0083	3501	1	0	1	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0084	3500	1	0	1	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0085	3500	1	0	0	1	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0086	3501	1	1	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0087	3501	1	0	0	0	0	1	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0088	3501	1	1	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0089	3501	1	0	0	0	0	1	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0090	3500	1	1	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0091	3500	1	1	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0092	3500	1	1	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0093	3501	1	1	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0094	3501	1	1	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0095	3501	1	1	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0096	3501	1	0	0	1	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0097	3501	1	0	0	1	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0098	3501	1	1	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0099	3501	1	1	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0100	3501	1	1	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0101	3501	1	1	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0102	3501	1	1	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0103	3500	1	1	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0104	3501	1	1	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0105	3501	1	0	0	1	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0106	3501	1	0	0	1	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0107	3500	1	0	0	1	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0108	3483	1	0	0	0	0	1	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	t0109	3483	1	0	0	0	0	1	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO2_chr17_48826035_48870245	0/1	t0001	2296	123	10	28	63	6	15	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	t0002	2296	87	23	25	30	3	6	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	t0003	2294	21	1	3	10	2	5	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	1/0	t0004	2295	20	16	0	2	1	0	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	t0005	2294	15	13	2	0	0	0	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	t0006	2295	8	3	3	2	0	0	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	t0007	2297	7	2	2	2	0	1	copy fasta	CALCOCO2	chr17	48826035	48870245