JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CALCOCO2_chr17_48826035_48870245	0/0	t0008	2296	6	0	0	6	0	0	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	t0009	2297	6	0	0	1	0	5	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	t0010	2294	4	4	0	0	0	0	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	t0011	2294	3	3	0	0	0	0	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	t0012	2295	3	3	0	0	0	0	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	t0013	2296	3	0	2	0	1	0	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	t0014	2297	3	1	1	0	1	0	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	t0015	2296	2	2	0	0	0	0	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	t0016	2294	2	0	0	0	0	2	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	t0017	2295	1	0	1	0	0	0	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	t0018	2296	1	0	1	0	0	0	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	t0019	2294	1	1	0	0	0	0	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	t0020	2296	1	1	0	0	0	0	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	t0021	2295	1	0	0	1	0	0	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	t0022	2296	1	0	0	1	0	0	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	t0023	2295	1	0	0	1	0	0	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	t0024	2296	1	0	1	0	0	0	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	t0025	2296	1	0	1	0	0	0	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	t0026	2296	1	0	0	1	0	0	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	t0027	2296	1	1	0	0	0	0	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	t0028	2297	1	0	0	0	0	1	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	t0029	2296	1	0	0	0	0	1	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	t0030	2295	1	0	0	1	0	0	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	t0031	2294	1	0	0	1	0	0	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCRL_chr2_187336964_187453252	1/0	t0001	4727	76	34	15	18	1	7	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	t0002	4728	74	12	16	37	4	5	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/1	t0003	4728	70	0	16	45	5	3	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	t0004	4727	38	0	10	27	0	1	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	t0005	4728	23	1	3	10	1	8	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	t0006	4728	12	8	2	0	1	1	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	t0007	4727	8	8	0	0	0	0	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	t0008	4727	3	3	0	0	0	0	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	t0009	4727	3	3	0	0	0	0	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	t0010	4727	3	3	0	0	0	0	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	t0011	4727	3	3	0	0	0	0	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	t0012	4727	2	2	0	0	0	0	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	t0013	4727	2	0	0	2	0	0	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	t0014	4728	2	2	0	0	0	0	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	t0015	4728	2	2	0	0	0	0	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	t0016	4728	2	0	0	2	0	0	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	t0017	4727	2	2	0	0	0	0	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	t0018	4727	1	1	0	0	0	0	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	t0019	4727	1	1	0	0	0	0	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	t0020	4727	1	0	0	0	0	1	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	t0021	4727	1	0	0	1	0	0	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	t0022	4727	1	1	0	0	0	0	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	t0023	4723	1	1	0	0	0	0	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	t0024	4723	1	1	0	0	0	0	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	t0025	4723	1	0	1	0	0	0	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	t0026	4727	1	0	1	0	0	0	copy fasta	CALCRL	chr2	187336964	187453252