JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CALCRL_chr2_187336964_187453252	0/0	t0027	4727	1	1	0	0	0	0	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	t0028	4727	1	0	0	0	0	1	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	t0029	4728	1	1	0	0	0	0	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	t0030	4728	1	0	0	0	0	1	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	t0031	4728	1	0	0	0	0	1	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	t0032	4728	1	0	0	1	0	0	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	t0033	4728	1	1	0	0	0	0	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	t0034	4727	1	0	0	1	0	0	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	t0035	4728	1	1	0	0	0	0	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	t0036	4728	1	0	0	0	0	1	copy fasta	CALCRL	chr2	187336964	187453252
CALCR_chr7_93419486_93579724	0/1	t0001	2148	113	36	14	46	3	13	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	1/0	t0002	2148	71	22	15	22	2	9	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	t0003	2152	34	1	3	26	1	3	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	t0004	2152	11	0	0	11	0	0	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	t0005	2152	7	0	0	7	0	0	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	t0006	2152	7	0	1	5	0	1	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	t0007	2149	6	3	1	0	2	0	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	t0008	2149	5	1	0	2	1	1	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	t0009	2148	4	4	0	0	0	0	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	t0010	2152	4	0	0	4	0	0	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	t0011	2148	3	2	1	0	0	0	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	t0012	2148	3	3	0	0	0	0	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	t0013	2148	3	2	1	0	0	0	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	t0014	2149	2	0	0	0	0	2	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	t0015	2153	2	1	0	0	0	1	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	t0016	2148	2	2	0	0	0	0	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	t0017	2148	2	1	1	0	0	0	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	t0018	2148	1	1	0	0	0	0	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	t0019	2149	1	1	0	0	0	0	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	t0020	2149	1	0	1	0	0	0	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	t0021	2148	1	1	0	0	0	0	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	t0022	2148	1	0	0	0	1	0	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	t0023	2148	1	0	1	0	0	0	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	t0024	2148	1	1	0	0	0	0	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	t0025	2152	1	0	0	1	0	0	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	t0026	2148	1	1	0	0	0	0	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	t0027	2148	1	1	0	0	0	0	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	t0028	2148	1	0	0	1	0	0	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	t0029	2148	1	0	1	0	0	0	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	t0030	2148	1	0	0	1	0	0	copy fasta	CALCR	chr7	93419486	93579724
CALD1_chr7_134774634_134975729	0/1	t0001	2626	70	14	16	24	3	12	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	t0002	2630	65	5	17	15	4	24	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	t0003	2630	52	8	11	27	2	4	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	t0004	2630	26	15	2	7	0	2	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	t0005	2630	19	18	1	0	0	0	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	t0006	2626	5	0	0	5	0	0	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	1/0	t0007	2630	5	0	3	0	1	0	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	t0008	2630	3	2	1	0	0	0	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	t0009	2630	3	3	0	0	0	0	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	t0010	2630	2	0	0	2	0	0	copy fasta	CALD1	chr7	134774634	134975729