JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CALD1_chr7_134774634_134975729	0/0	t0011	2626	2	0	0	2	0	0	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	t0012	2630	2	2	0	0	0	0	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	t0013	2630	1	1	0	0	0	0	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	t0014	2630	1	1	0	0	0	0	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	t0015	2630	1	1	0	0	0	0	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	t0016	2630	1	1	0	0	0	0	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	t0017	2626	1	1	0	0	0	0	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	t0018	2630	1	1	0	0	0	0	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	t0019	2630	1	0	1	0	0	0	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	t0020	2630	1	1	0	0	0	0	copy fasta	CALD1	chr7	134774634	134975729
CALHM1_chr10_103448240_103463900	0/0	t0001	2175	85	17	18	45	1	4	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0002	2175	53	10	6	35	0	2	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0003	2175	41	0	7	29	3	2	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/1	t0004	2172	34	2	1	23	0	7	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0005	2175	30	18	1	8	2	1	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0006	2175	25	2	3	19	1	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0007	2175	25	0	11	6	6	2	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0008	2175	22	7	0	15	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0009	2172	15	7	2	0	0	6	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0010	2175	15	1	5	9	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0011	2172	14	9	0	3	0	2	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0012	2175	12	0	3	7	0	2	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0013	2175	8	0	2	5	0	1	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0014	2169	7	0	7	0	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0015	2172	6	0	0	3	0	3	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0016	2175	6	1	1	1	1	2	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0017	2175	5	4	1	0	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0018	2175	5	1	1	1	0	2	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0019	2172	5	1	3	0	0	1	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0020	2175	5	0	1	0	0	4	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0021	2175	4	3	0	1	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0022	2175	3	0	0	0	0	3	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	1/0	t0023	2172	3	0	0	0	2	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0024	2172	2	2	0	0	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0025	2172	2	0	0	0	2	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0026	2175	2	0	0	2	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0027	2172	2	0	0	0	0	2	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0028	2172	2	2	0	0	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0029	2172	2	1	1	0	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0030	2175	2	0	0	2	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0031	2175	1	0	0	1	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0032	2175	1	0	0	1	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0033	2175	1	0	1	0	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0034	2175	1	1	0	0	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0035	2172	1	1	0	0	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0036	2172	1	1	0	0	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0037	2172	1	1	0	0	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0038	2175	1	0	1	0	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0039	2175	1	0	0	0	0	1	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0040	2175	1	0	0	0	0	1	copy fasta	CALHM1	chr10	103448240	103463900