Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACY3_chr11_67637555_67655730	0/0	t0007	412	1	1	0	0	0	0	copy fasta	ACY3	chr11	67637555	67655730
ACY3_chr11_67637555_67655730	0/0	t0008	412	1	0	1	0	0	0	copy fasta	ACY3	chr11	67637555	67655730
ACY3_chr11_67637555_67655730	0/0	t0009	412	1	0	0	0	0	1	copy fasta	ACY3	chr11	67637555	67655730
ACY3_chr11_67637555_67655730	0/0	t0010	412	1	1	0	0	0	0	copy fasta	ACY3	chr11	67637555	67655730
ACY3_chr11_67637555_67655730	0/0	t0011	412	1	0	0	1	0	0	copy fasta	ACY3	chr11	67637555	67655730
ACY3_chr11_67637555_67655730	0/0	t0012	412	1	0	0	1	0	0	copy fasta	ACY3	chr11	67637555	67655730
ACY3_chr11_67637555_67655730	0/0	t0013	412	1	1	0	0	0	0	copy fasta	ACY3	chr11	67637555	67655730
ACYP1_chr14_75048243_75069024	1/0	t0001	281	166	70	34	28	7	26	copy fasta	ACYP1	chr14	75048243	75069024
ACYP1_chr14_75048243_75069024	0/1	t0002	281	156	20	28	80	7	20	copy fasta	ACYP1	chr14	75048243	75069024
ACYP2_chr2_53966113_54310300	1/0	t0001	744	142	47	28	45	9	12	copy fasta	ACYP2	chr2	53966113	54310300
ACYP2_chr2_53966113_54310300	0/1	t0002	744	66	8	12	33	2	10	copy fasta	ACYP2	chr2	53966113	54310300
ACYP2_chr2_53966113_54310300	0/0	t0003	744	23	16	2	1	3	1	copy fasta	ACYP2	chr2	53966113	54310300
ACYP2_chr2_53966113_54310300	0/0	t0004	743	19	0	7	10	1	1	copy fasta	ACYP2	chr2	53966113	54310300
ACYP2_chr2_53966113_54310300	0/0	t0005	743	6	0	2	3	1	0	copy fasta	ACYP2	chr2	53966113	54310300
ACYP2_chr2_53966113_54310300	0/0	t0006	744	3	3	0	0	0	0	copy fasta	ACYP2	chr2	53966113	54310300
ACYP2_chr2_53966113_54310300	0/0	t0007	744	2	2	0	0	0	0	copy fasta	ACYP2	chr2	53966113	54310300
ACYP2_chr2_53966113_54310300	0/0	t0008	744	2	2	0	0	0	0	copy fasta	ACYP2	chr2	53966113	54310300
ACYP2_chr2_53966113_54310300	0/0	t0009	744	2	2	0	0	0	0	copy fasta	ACYP2	chr2	53966113	54310300
ACYP2_chr2_53966113_54310300	0/0	t0010	744	1	1	0	0	0	0	copy fasta	ACYP2	chr2	53966113	54310300
ACYP2_chr2_53966113_54310300	0/0	t0011	744	1	1	0	0	0	0	copy fasta	ACYP2	chr2	53966113	54310300
ACYP2_chr2_53966113_54310300	0/0	t0012	744	1	1	0	0	0	0	copy fasta	ACYP2	chr2	53966113	54310300
ACYP2_chr2_53966113_54310300	0/0	t0013	744	1	0	0	1	0	0	copy fasta	ACYP2	chr2	53966113	54310300
ACYP2_chr2_53966113_54310300	0/0	t0014	744	1	0	1	0	0	0	copy fasta	ACYP2	chr2	53966113	54310300
ACYP2_chr2_53966113_54310300	0/0	t0015	743	1	0	0	1	0	0	copy fasta	ACYP2	chr2	53966113	54310300
ACYP2_chr2_53966113_54310300	0/0	t0016	744	1	1	0	0	0	0	copy fasta	ACYP2	chr2	53966113	54310300
ADA2_chr22_17173790_17224435	0/0	t0001	2820	128	13	24	78	2	11	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0002	2820	37	20	6	8	1	2	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0003	2820	37	16	6	13	1	1	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	1/0	t0004	2820	36	3	13	8	3	8	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0005	2820	25	0	0	19	0	6	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/1	t0006	2820	16	0	9	2	2	2	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0007	2820	13	4	1	8	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0008	2820	13	1	4	4	2	2	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0009	2820	12	3	6	1	0	2	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0010	2820	11	11	0	0	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0011	2820	11	0	0	10	0	1	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0012	2820	9	1	2	6	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0013	2820	6	0	1	3	0	2	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0014	2820	5	5	0	0	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0015	2819	5	5	0	0	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0016	2820	4	0	0	2	0	2	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0017	2820	3	3	0	0	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0018	2820	2	1	0	0	0	1	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0019	2820	2	0	0	1	0	1	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0020	2820	2	1	0	1	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0021	2820	1	0	0	1	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0022	2820	1	0	0	1	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0023	2820	1	0	0	1	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0024	2820	1	0	0	0	1	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0025	2820	1	0	0	1	0	0	copy fasta	ADA2	chr22	17173790	17224435