JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CALHM1_chr10_103448240_103463900	0/0	t0041	2172	1	0	1	0	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0042	2175	1	0	1	0	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0043	2175	1	1	0	0	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0044	2175	1	0	0	0	0	1	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0045	2175	1	0	0	0	0	1	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0046	2175	1	0	1	0	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0047	2175	1	0	1	0	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0048	2175	1	0	0	1	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0049	2175	1	1	0	0	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	t0050	2172	1	0	0	1	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM2_chr10_103441786_103457370	1/0	t0001	943	265	72	38	125	9	20	copy fasta	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/1	t0002	943	170	15	30	88	8	28	copy fasta	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	t0003	943	10	2	5	0	1	2	copy fasta	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	t0004	943	3	0	0	3	0	0	copy fasta	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	t0005	943	2	2	0	0	0	0	copy fasta	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	t0006	943	2	1	1	0	0	0	copy fasta	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	t0007	943	1	0	0	1	0	0	copy fasta	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	t0008	943	1	1	0	0	0	0	copy fasta	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	t0009	943	1	0	1	0	0	0	copy fasta	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	t0010	943	1	1	0	0	0	0	copy fasta	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	t0011	943	1	0	1	0	0	0	copy fasta	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	t0012	943	1	0	0	1	0	0	copy fasta	CALHM2	chr10	103441786	103457370
CALHM3_chr10_103467804_103484240	0/1	t0001	618	326	44	58	171	11	41	copy fasta	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	1/0	t0002	618	69	32	17	10	7	2	copy fasta	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	t0003	618	29	0	0	28	0	1	copy fasta	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	t0004	618	21	18	3	0	0	0	copy fasta	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	t0005	618	3	3	0	0	0	0	copy fasta	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	t0006	618	1	1	0	0	0	0	copy fasta	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	t0007	618	1	0	0	1	0	0	copy fasta	CALHM3	chr10	103467804	103484240
CALHM4_chr6_116548751_116566127	0/0	t0001	2957	135	10	38	74	5	8	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0002	2957	76	8	8	49	5	6	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/1	t0003	2958	25	10	1	5	0	8	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	1/0	t0004	2960	23	10	2	8	1	1	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0005	2961	14	7	1	5	0	1	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0006	2958	13	0	0	12	0	1	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0007	2958	13	0	3	10	0	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0008	2960	9	0	1	1	0	7	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0009	2960	8	0	0	8	0	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0010	2960	7	6	1	0	0	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0011	2961	6	0	3	0	2	1	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0012	2957	6	1	2	1	0	2	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0013	2959	6	6	0	0	0	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0014	2959	5	5	0	0	0	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0015	2960	5	4	0	0	1	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0016	2959	4	4	0	0	0	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0017	2955	4	0	0	1	0	3	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0018	2958	4	3	1	0	0	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0019	2959	4	0	0	4	0	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0020	2960	3	3	0	0	0	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0021	2959	3	0	0	3	0	0	copy fasta	CALHM4	chr6	116548751	116566127