JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CALHM4_chr6_116548751_116566127	0/0	t0022	2957	2	0	0	2	0	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0023	2957	2	0	1	0	0	1	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0024	2958	2	2	0	0	0	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0025	2957	2	0	1	0	0	1	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0026	2958	2	1	1	0	0	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0027	2958	2	2	0	0	0	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0028	2959	2	1	0	0	1	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0029	2957	1	0	0	1	0	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0030	2958	1	1	0	0	0	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0031	2955	1	0	0	0	0	1	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0032	2958	1	1	0	0	0	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0033	2957	1	0	1	0	0	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0034	2957	1	0	1	0	0	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0035	2960	1	0	0	0	0	1	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0036	2958	1	0	0	1	0	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0037	2960	1	0	0	0	1	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0038	2957	1	0	1	0	0	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0039	2957	1	0	0	1	0	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0040	2959	1	1	0	0	0	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0041	2959	1	1	0	0	0	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0042	2959	1	0	0	0	1	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0043	2960	1	1	0	0	0	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0044	2960	1	1	0	0	0	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0045	2957	1	0	0	0	1	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0046	2958	1	0	1	0	0	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0047	2958	1	1	0	0	0	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0048	2961	1	1	0	0	0	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	t0049	2958	1	1	0	0	0	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM5_chr6_116506639_116529788	0/0	t0001	8836	94	2	21	60	3	8	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0002	9170	13	0	2	10	0	1	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0003	8854	12	6	0	0	2	4	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0004	9173	11	0	3	5	2	1	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0005	8858	8	0	0	8	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0006	8841	8	8	0	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0007	8836	7	7	0	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0008	8832	6	5	1	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0009	8838	6	1	0	5	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0010	8860	5	0	4	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0011	8848	5	0	0	5	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0012	8856	5	3	0	1	1	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/1	t0013	8860	5	0	1	0	0	3	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0014	8834	4	3	1	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0015	8846	4	0	0	4	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0016	8856	4	0	0	3	0	1	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0017	9174	4	0	1	3	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0018	8860	4	4	0	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0019	9178	4	0	0	4	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0020	8862	3	0	3	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0021	8850	3	2	1	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0022	8852	3	3	0	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788