JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CALHM5_chr6_116506639_116529788	0/0	t0023	8852	3	3	0	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0024	8852	3	0	2	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0025	8854	3	0	0	0	1	2	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0026	8858	3	1	1	0	1	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0027	9168	3	0	1	2	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0028	9171	3	0	1	0	2	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0029	9174	3	0	0	3	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0030	8858	3	2	1	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0031	8859	3	0	1	1	0	1	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0032	9179	3	0	2	0	1	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0033	8836	2	0	1	0	1	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0034	8836	2	0	0	2	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0035	8836	2	0	0	0	2	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0036	8836	2	0	0	2	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0037	8836	2	0	2	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0038	8856	2	2	0	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0039	8857	2	2	0	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0040	8862	2	0	2	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0041	8844	2	0	0	2	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0042	8850	2	0	0	2	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0043	8856	2	0	2	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0044	8856	2	0	0	0	0	2	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	1/0	t0045	8858	2	0	0	0	1	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0046	9170	2	0	0	2	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0047	9170	2	0	2	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0048	9172	2	0	0	2	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0049	8856	2	2	0	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0050	9191	2	0	0	2	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0051	9202	2	0	0	2	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0052	9205	2	0	1	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0053	9199	2	0	0	2	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0054	9188	2	1	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0055	8861	2	0	2	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0056	8860	2	2	0	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0057	8858	1	1	0	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0058	8836	1	0	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0059	8836	1	0	1	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0060	8836	1	0	0	0	0	1	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0061	8836	1	0	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0062	8836	1	0	1	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0063	8836	1	0	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0064	8836	1	0	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0065	8842	1	0	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0066	8854	1	1	0	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0067	8855	1	1	0	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0068	8856	1	0	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0069	8859	1	1	0	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0070	8860	1	0	1	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0071	8858	1	0	0	0	0	1	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0072	8864	1	0	0	0	0	1	copy fasta	CALHM5	chr6	116506639	116529788