JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CALHM5_chr6_116506639_116529788	0/0	t0123	9189	1	0	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0124	9172	1	0	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0125	9201	1	0	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0126	9193	1	0	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0127	9184	1	0	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0128	8857	1	0	0	0	0	1	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0129	9209	1	0	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0130	9205	1	0	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0131	9194	1	0	0	0	0	1	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0132	9192	1	0	0	0	0	1	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0133	8856	1	0	0	0	1	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0134	9187	1	0	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0135	9186	1	0	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0136	9177	1	0	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0137	9188	1	1	0	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0138	9207	1	0	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0139	9205	1	0	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0140	9208	1	1	0	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0141	9206	1	1	0	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0142	9204	1	1	0	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0143	9192	1	1	0	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0144	9188	1	0	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0145	9185	1	0	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0146	9182	1	0	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0147	9212	1	0	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0148	9207	1	0	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0149	9198	1	0	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0150	9192	1	0	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0151	9187	1	0	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0152	9180	1	0	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0153	8862	1	1	0	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0154	8862	1	1	0	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0155	9214	1	0	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0156	9209	1	0	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0157	9194	1	0	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0158	9193	1	0	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0159	9189	1	0	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0160	9191	1	0	0	0	0	1	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0161	9190	1	0	0	0	0	1	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	t0162	9175	1	0	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM6_chr6_116456375_116468771	1/1	t0001	180	432	93	65	208	18	46	copy fasta	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	t0002	179	6	1	4	0	0	1	copy fasta	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	t0003	180	2	0	1	0	0	1	copy fasta	CALHM6	chr6	116456375	116468771
CALM1_chr14_90392029_90413268	0/1	t0001	3754	91	7	24	39	7	13	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0002	3754	80	3	14	62	0	1	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0003	3753	52	0	14	29	2	7	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0004	3754	44	12	18	3	1	10	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0005	3753	30	30	0	0	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0006	3752	10	2	1	6	1	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0007	3752	9	0	0	9	0	0	copy fasta	CALM1	chr14	90392029	90413268