JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CALM1_chr14_90392029_90413268	0/0	t0008	3753	8	8	0	0	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0009	3753	6	5	1	0	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0010	3753	5	0	1	3	0	1	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0011	3753	5	5	0	0	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0012	3755	5	0	0	2	0	3	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0013	3753	4	0	0	4	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0014	3753	3	0	0	3	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0015	3753	3	3	0	0	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0016	3750	3	0	1	0	0	2	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0017	3753	3	1	2	0	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0018	3753	3	3	0	0	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0019	3766	2	2	0	0	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0020	3754	2	2	0	0	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	1/0	t0021	3754	2	0	0	1	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0022	3753	2	0	1	1	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0023	3753	2	2	0	0	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0024	3754	2	0	0	1	0	1	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0025	3753	2	2	0	0	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0026	3753	2	2	0	0	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0027	3753	1	1	0	0	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0028	3754	1	0	0	1	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0029	3753	1	0	0	0	0	1	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0030	3753	1	0	1	0	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0031	3754	1	0	0	1	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0032	3753	1	1	0	0	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0033	3753	1	1	0	0	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0034	3755	1	0	1	0	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0035	3756	1	0	0	1	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0036	3752	1	0	0	0	0	1	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0037	3752	1	0	0	0	0	1	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0038	3753	1	0	0	0	0	1	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0039	3754	1	0	0	0	0	1	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0040	3753	1	0	1	0	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0041	3754	1	0	1	0	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0042	3754	1	0	0	0	1	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0043	3754	1	0	0	1	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0044	3754	1	0	0	1	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0045	3755	1	0	0	1	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0046	3755	1	0	0	1	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0047	3754	1	1	0	0	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0048	3754	1	1	0	0	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0049	3752	1	0	0	0	0	1	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0050	3753	1	0	0	1	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0051	3753	1	1	0	0	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0052	3752	1	0	0	1	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0053	3753	1	0	1	0	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	t0054	3753	1	1	0	0	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM2_chr2_47155084_47181511	1/1	t0001	761	421	87	73	199	14	46	copy fasta	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	t0002	761	6	6	0	0	0	0	copy fasta	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	t0003	761	2	1	1	0	0	0	copy fasta	CALM2	chr2	47155084	47181511