JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CALM2_chr2_47155084_47181511	0/0	t0004	761	2	2	0	0	0	0	copy fasta	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	t0005	761	1	0	0	1	0	0	copy fasta	CALM2	chr2	47155084	47181511
CALM3_chr19_46596330_46615782	0/0	t0001	1735	185	44	33	81	4	23	copy fasta	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	t0002	1735	168	30	31	83	9	15	copy fasta	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/1	t0003	1735	30	13	8	6	2	0	copy fasta	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	1/0	t0004	1735	18	3	4	4	3	3	copy fasta	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	t0005	1735	9	0	1	8	0	0	copy fasta	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	t0006	1735	2	0	1	0	0	1	copy fasta	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	t0007	1735	1	0	0	1	0	0	copy fasta	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	t0008	1735	1	0	0	1	0	0	copy fasta	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	t0009	1735	1	1	0	0	0	0	copy fasta	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	t0010	1735	1	1	0	0	0	0	copy fasta	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	t0011	1735	1	0	0	1	0	0	copy fasta	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	t0012	1735	1	0	1	0	0	0	copy fasta	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	t0013	1735	1	0	0	1	0	0	copy fasta	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	t0014	1735	1	0	0	1	0	0	copy fasta	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	t0015	1735	1	0	0	1	0	0	copy fasta	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	t0016	1735	1	0	1	0	0	0	copy fasta	CALM3	chr19	46596330	46615782
CALML3_chr10_5519961_5531771	0/0	t0001	1362	120	10	24	71	4	11	copy fasta	CALML3	chr10	5519961	5531771
CALML3_chr10_5519961_5531771	0/0	t0002	1362	97	10	8	74	1	4	copy fasta	CALML3	chr10	5519961	5531771
CALML3_chr10_5519961_5531771	0/1	t0003	1363	83	7	12	47	4	12	copy fasta	CALML3	chr10	5519961	5531771
CALML3_chr10_5519961_5531771	0/0	t0004	1362	67	16	16	12	4	19	copy fasta	CALML3	chr10	5519961	5531771
CALML3_chr10_5519961_5531771	1/0	t0005	1362	29	17	7	0	2	2	copy fasta	CALML3	chr10	5519961	5531771
CALML3_chr10_5519961_5531771	0/0	t0006	1363	10	0	9	1	0	0	copy fasta	CALML3	chr10	5519961	5531771
CALML3_chr10_5519961_5531771	0/0	t0007	1365	7	7	0	0	0	0	copy fasta	CALML3	chr10	5519961	5531771
CALML3_chr10_5519961_5531771	0/0	t0008	1362	6	6	0	0	0	0	copy fasta	CALML3	chr10	5519961	5531771
CALML3_chr10_5519961_5531771	0/0	t0009	1362	5	4	1	0	0	0	copy fasta	CALML3	chr10	5519961	5531771
CALML3_chr10_5519961_5531771	0/0	t0010	1362	3	1	2	0	0	0	copy fasta	CALML3	chr10	5519961	5531771
CALML3_chr10_5519961_5531771	0/0	t0011	1362	3	3	0	0	0	0	copy fasta	CALML3	chr10	5519961	5531771
CALML3_chr10_5519961_5531771	0/0	t0012	1362	2	0	0	0	2	0	copy fasta	CALML3	chr10	5519961	5531771
CALML3_chr10_5519961_5531771	0/0	t0013	1362	2	0	1	1	0	0	copy fasta	CALML3	chr10	5519961	5531771
CALML3_chr10_5519961_5531771	0/0	t0014	1362	2	2	0	0	0	0	copy fasta	CALML3	chr10	5519961	5531771
CALML3_chr10_5519961_5531771	0/0	t0015	1362	2	2	0	0	0	0	copy fasta	CALML3	chr10	5519961	5531771
CALML3_chr10_5519961_5531771	0/0	t0016	1362	2	2	0	0	0	0	copy fasta	CALML3	chr10	5519961	5531771
CALML3_chr10_5519961_5531771	0/0	t0017	1362	1	1	0	0	0	0	copy fasta	CALML3	chr10	5519961	5531771
CALML3_chr10_5519961_5531771	0/0	t0018	1363	1	0	0	1	0	0	copy fasta	CALML3	chr10	5519961	5531771
CALML3_chr10_5519961_5531771	0/0	t0019	1362	1	1	0	0	0	0	copy fasta	CALML3	chr10	5519961	5531771
CALML3_chr10_5519961_5531771	0/0	t0020	1363	1	1	0	0	0	0	copy fasta	CALML3	chr10	5519961	5531771
CALML3_chr10_5519961_5531771	0/0	t0021	1362	1	0	1	0	0	0	copy fasta	CALML3	chr10	5519961	5531771
CALML3_chr10_5519961_5531771	0/0	t0022	1362	1	0	1	0	0	0	copy fasta	CALML3	chr10	5519961	5531771
CALML3_chr10_5519961_5531771	0/0	t0023	1362	1	1	0	0	0	0	copy fasta	CALML3	chr10	5519961	5531771
CALML3_chr10_5519961_5531771	0/0	t0024	1363	1	1	0	0	0	0	copy fasta	CALML3	chr10	5519961	5531771
CALML3_chr10_5519961_5531771	0/0	t0025	1362	1	0	0	0	1	0	copy fasta	CALML3	chr10	5519961	5531771
CALML3_chr10_5519961_5531771	0/0	t0026	1362	1	1	0	0	0	0	copy fasta	CALML3	chr10	5519961	5531771
CALML3_chr10_5519961_5531771	0/0	t0027	1362	1	1	0	0	0	0	copy fasta	CALML3	chr10	5519961	5531771
CALML3_chr10_5519961_5531771	0/0	t0028	1362	1	0	0	1	0	0	copy fasta	CALML3	chr10	5519961	5531771
CALML4_chr15_68185705_68210332	0/1	t0001	3396	160	26	40	70	6	17	copy fasta	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	1/0	t0002	3396	121	20	22	49	7	22	copy fasta	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	t0003	3396	34	26	1	7	0	0	copy fasta	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	t0004	3396	11	0	0	11	0	0	copy fasta	CALML4	chr15	68185705	68210332