JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CALML4_chr15_68185705_68210332	0/0	t0005	3396	9	0	0	8	0	1	copy fasta	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	t0006	3392	8	2	0	6	0	0	copy fasta	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	t0007	3396	4	4	0	0	0	0	copy fasta	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	t0008	3420	4	0	2	0	1	1	copy fasta	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	t0009	3396	4	4	0	0	0	0	copy fasta	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	t0010	3397	3	3	0	0	0	0	copy fasta	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	t0011	3399	3	0	3	0	0	0	copy fasta	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	t0012	3396	3	3	0	0	0	0	copy fasta	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	t0013	3396	3	0	0	3	0	0	copy fasta	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	t0014	3396	2	0	2	0	0	0	copy fasta	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	t0015	3396	2	2	0	0	0	0	copy fasta	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	t0016	3396	1	1	0	0	0	0	copy fasta	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	t0017	3396	1	1	0	0	0	0	copy fasta	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	t0018	3418	1	0	0	1	0	0	copy fasta	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	t0019	3396	1	1	0	0	0	0	copy fasta	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	t0020	3396	1	0	0	1	0	0	copy fasta	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	t0021	3396	1	1	0	0	0	0	copy fasta	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	t0022	3396	1	1	0	0	0	0	copy fasta	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	t0023	3396	1	0	0	1	0	0	copy fasta	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	t0024	3396	1	0	0	1	0	0	copy fasta	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	t0025	3396	1	0	0	1	0	0	copy fasta	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	t0026	3397	1	1	0	0	0	0	copy fasta	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	t0027	3396	1	0	0	0	0	1	copy fasta	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	t0028	3396	1	0	0	1	0	0	copy fasta	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	t0029	3396	1	0	0	1	0	0	copy fasta	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	t0030	3396	1	0	0	1	0	0	copy fasta	CALML4	chr15	68185705	68210332
CALML5_chr10_5493697_5504570	1/1	t0001	434	396	86	67	183	17	41	copy fasta	CALML5	chr10	5493697	5504570
CALML5_chr10_5493697_5504570	0/0	t0002	434	42	7	5	25	0	5	copy fasta	CALML5	chr10	5493697	5504570
CALML5_chr10_5493697_5504570	0/0	t0003	434	2	0	2	0	0	0	copy fasta	CALML5	chr10	5493697	5504570
CALML5_chr10_5493697_5504570	0/0	t0004	434	1	0	0	1	0	0	copy fasta	CALML5	chr10	5493697	5504570
CALML5_chr10_5493697_5504570	0/0	t0005	434	1	0	0	1	0	0	copy fasta	CALML5	chr10	5493697	5504570
CALML5_chr10_5493697_5504570	0/0	t0006	434	1	1	0	0	0	0	copy fasta	CALML5	chr10	5493697	5504570
CALML5_chr10_5493697_5504570	0/0	t0007	434	1	0	0	0	1	0	copy fasta	CALML5	chr10	5493697	5504570
CALML6_chr1_1910260_1922296	0/1	t0001	125	389	89	77	162	16	44	copy fasta	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	1/0	t0002	125	2	0	1	0	0	0	copy fasta	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	t0003	125	1	1	0	0	0	0	copy fasta	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	t0004	125	1	1	0	0	0	0	copy fasta	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	t0005	125	1	1	0	0	0	0	copy fasta	CALML6	chr1	1910260	1922296
CALN1_chr7_71774491_72417338	0/0	t0001	8640	35	8	12	6	2	7	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0002	8640	15	4	2	8	0	1	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0003	8640	6	1	4	0	0	1	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0004	8641	5	4	1	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0005	8640	4	1	1	2	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0006	8640	3	0	1	2	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0007	8640	3	0	2	0	1	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0008	8636	3	2	1	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0009	8640	3	3	0	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0010	8636	3	3	0	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0011	8639	2	2	0	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0012	8640	2	0	0	1	0	1	copy fasta	CALN1	chr7	71774491	72417338