JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CALN1_chr7_71774491_72417338	0/0	t0013	8640	2	2	0	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0014	8640	2	0	2	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0015	8640	2	2	0	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0016	8640	2	0	0	2	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0017	8640	2	1	1	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0018	8640	2	2	0	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0019	8640	2	2	0	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0020	8640	2	0	0	2	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0021	8640	2	0	0	0	1	1	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0022	8640	1	0	1	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0023	8639	1	1	0	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0024	8640	1	0	0	1	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0025	8640	1	0	0	1	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0026	8640	1	0	0	1	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0027	8640	1	1	0	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0028	8640	1	0	0	1	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0029	8640	1	0	1	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0030	8640	1	0	1	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0031	8640	1	0	0	1	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0032	8640	1	1	0	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0033	8640	1	1	0	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0034	8636	1	1	0	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0035	8640	1	1	0	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0036	8621	1	1	0	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0037	8640	1	1	0	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0038	8640	1	0	0	1	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0039	8640	1	1	0	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0040	8640	1	0	1	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0041	8640	1	1	0	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0042	8640	1	0	1	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0043	8640	1	1	0	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0044	8640	1	0	0	1	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0045	8640	1	0	0	1	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0046	8640	1	0	0	1	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0047	8640	1	0	1	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0048	8640	1	1	0	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0049	8640	1	1	0	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0050	8640	1	0	0	0	1	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0051	8640	1	0	0	0	0	1	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0052	8640	1	0	1	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0053	8641	1	1	0	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0054	8640	1	1	0	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0055	8636	1	1	0	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0056	8621	1	1	0	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0057	8640	1	0	0	0	1	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0058	8640	1	1	0	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0059	8640	1	1	0	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0060	8640	1	1	0	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALN1_chr7_71774491_72417338	0/0	t0061	8640	1	1	0	0	0	0	copy fasta	CALN1	chr7	71774491	72417338
CALR3_chr19_16474061_16501167	1/1	t0001	109	370	88	74	158	14	34	copy fasta	CALR3	chr19	16474061	16501167