JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CALR_chr19_12933609_12949489	0/1	t0001	647	163	33	35	68	10	16	copy fasta	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	1/0	t0002	648	131	36	33	39	5	17	copy fasta	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	t0003	648	25	24	1	0	0	0	copy fasta	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	t0004	646	12	0	1	9	1	1	copy fasta	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	t0005	647	6	0	3	3	0	0	copy fasta	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	t0006	647	4	0	0	4	0	0	copy fasta	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	t0007	648	2	2	0	0	0	0	copy fasta	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	t0008	648	2	0	0	0	0	2	copy fasta	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	t0009	648	1	0	1	0	0	0	copy fasta	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	t0010	648	1	1	0	0	0	0	copy fasta	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	t0011	647	1	1	0	0	0	0	copy fasta	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	t0012	648	1	0	0	1	0	0	copy fasta	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	t0013	648	1	1	0	0	0	0	copy fasta	CALR	chr19	12933609	12949489
CALU_chr7_128734359_128778400	0/0	t0001	4320	147	18	40	67	5	17	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0002	4316	35	2	3	26	0	4	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0003	4301	20	4	7	0	2	7	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0004	4301	15	0	6	3	2	4	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0005	4320	11	9	2	0	0	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0006	4320	10	0	8	0	2	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/1	t0007	4317	10	0	6	0	3	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0008	4319	9	9	0	0	0	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0009	4301	9	0	0	9	0	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0010	4319	6	6	0	0	0	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0011	4318	5	5	0	0	0	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0012	4321	5	1	0	2	0	2	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0013	4317	5	4	0	1	0	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0014	4320	3	3	0	0	0	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0015	4320	3	3	0	0	0	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0016	4317	3	3	0	0	0	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0017	4320	3	3	0	0	0	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0018	4319	3	3	0	0	0	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0019	4319	3	0	0	3	0	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0020	4318	2	1	1	0	0	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0021	4320	2	0	1	1	0	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0022	4316	2	2	0	0	0	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0023	4316	2	0	2	0	0	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0024	4316	2	1	1	0	0	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0025	4301	2	0	2	0	0	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0026	4301	2	2	0	0	0	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0027	4317	1	1	0	0	0	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0028	4320	1	0	0	1	0	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0029	4316	1	0	0	1	0	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0030	4317	1	1	0	0	0	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0031	4316	1	0	0	0	0	1	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0032	4320	1	0	1	0	0	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0033	4319	1	0	0	1	0	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0034	4320	1	0	1	0	0	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0035	4316	1	0	0	1	0	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0036	4320	1	0	0	0	0	1	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	1/0	t0037	4319	1	0	0	0	0	0	copy fasta	CALU	chr7	128734359	128778400