Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADA2_chr22_17173790_17224435	0/0	t0026	2819	1	1	0	0	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0027	2820	1	1	0	0	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0028	2819	1	1	0	0	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0029	2820	1	0	1	0	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0030	2820	1	0	0	1	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0031	2820	1	1	0	0	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0032	2820	1	1	0	0	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0033	2820	1	1	0	0	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0034	2820	1	1	0	0	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0035	2820	1	0	1	0	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0036	2820	1	0	0	0	0	1	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0037	2820	1	0	0	1	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0038	2820	1	0	0	1	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0039	2820	1	0	0	0	0	1	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0040	2820	1	0	0	1	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0041	2820	1	0	1	0	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0042	2820	1	0	0	0	0	1	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0043	2820	1	0	1	0	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0044	2820	1	0	1	0	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0045	2820	1	1	0	0	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0046	2820	1	0	0	0	1	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0047	2820	1	0	0	0	1	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0048	2820	1	0	0	0	0	1	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0049	2820	1	1	0	0	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0050	2820	1	0	0	0	0	1	copy fasta	ADA2	chr22	17173790	17224435
ADA2_chr22_17173790_17224435	0/0	t0051	2820	1	0	1	0	0	0	copy fasta	ADA2	chr22	17173790	17224435
ADAD1_chr4_122374011_122434784	1/1	t0001	233	371	91	63	168	17	30	copy fasta	ADAD1	chr4	122374011	122434784
ADAD1_chr4_122374011_122434784	0/0	t0002	233	3	3	0	0	0	0	copy fasta	ADAD1	chr4	122374011	122434784
ADAD1_chr4_122374011_122434784	0/0	t0003	233	1	0	0	0	1	0	copy fasta	ADAD1	chr4	122374011	122434784
ADAD1_chr4_122374011_122434784	0/0	t0004	233	1	0	1	0	0	0	copy fasta	ADAD1	chr4	122374011	122434784
ADAD2_chr16_84186157_84202166	0/1	t0001	267	268	60	50	125	8	24	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	1/0	t0002	267	129	17	30	56	9	16	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	t0003	267	26	0	1	21	0	4	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	t0004	267	20	15	0	4	0	1	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	t0005	267	11	0	0	11	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	t0006	267	7	3	2	0	1	1	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	t0007	267	4	4	0	0	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	t0008	267	3	0	1	0	0	2	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	t0009	267	1	0	0	1	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAD2_chr16_84186157_84202166	0/0	t0010	267	1	1	0	0	0	0	copy fasta	ADAD2	chr16	84186157	84202166
ADAL_chr15_43325672_43359569	1/1	t0001	3201	125	2	34	68	6	13	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	t0002	3197	106	23	7	63	1	12	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	t0003	3200	32	2	8	15	1	6	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	t0004	3197	30	13	7	0	4	6	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	t0005	3197	20	0	0	20	0	0	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	t0006	3197	12	11	1	0	0	0	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	t0007	3197	10	9	1	0	0	0	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	t0008	3201	6	5	1	0	0	0	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	t0009	3197	6	0	1	5	0	0	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	t0010	3196	6	5	1	0	0	0	copy fasta	ADAL	chr15	43325672	43359569