JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CALU_chr7_128734359_128778400	0/0	t0038	4320	1	1	0	0	0	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0039	4317	1	0	0	1	0	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0040	4317	1	1	0	0	0	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0041	4320	1	0	0	1	0	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0042	4317	1	0	0	1	0	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0043	4320	1	0	0	1	0	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0044	4302	1	0	1	0	0	0	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	t0045	4301	1	1	0	0	0	0	copy fasta	CALU	chr7	128734359	128778400
CALY_chr10_133319072_133341896	1/1	t0001	1607	149	45	30	40	11	21	copy fasta	CALY	chr10	133319072	133341896
CALY_chr10_133319072_133341896	0/0	t0002	1554	33	9	6	12	1	5	copy fasta	CALY	chr10	133319072	133341896
CALY_chr10_133319072_133341896	0/0	t0003	1574	28	18	2	5	0	3	copy fasta	CALY	chr10	133319072	133341896
CALY_chr10_133319072_133341896	0/0	t0004	1607	7	0	0	7	0	0	copy fasta	CALY	chr10	133319072	133341896
CALY_chr10_133319072_133341896	0/0	t0005	1587	4	3	1	0	0	0	copy fasta	CALY	chr10	133319072	133341896
CALY_chr10_133319072_133341896	0/0	t0006	1554	3	0	0	3	0	0	copy fasta	CALY	chr10	133319072	133341896
CALY_chr10_133319072_133341896	0/0	t0007	1607	3	1	0	0	1	1	copy fasta	CALY	chr10	133319072	133341896
CALY_chr10_133319072_133341896	0/0	t0008	1608	3	3	0	0	0	0	copy fasta	CALY	chr10	133319072	133341896
CALY_chr10_133319072_133341896	0/0	t0009	1641	3	3	0	0	0	0	copy fasta	CALY	chr10	133319072	133341896
CALY_chr10_133319072_133341896	0/0	t0010	1607	3	1	2	0	0	0	copy fasta	CALY	chr10	133319072	133341896
CALY_chr10_133319072_133341896	0/0	t0011	1607	2	0	0	2	0	0	copy fasta	CALY	chr10	133319072	133341896
CALY_chr10_133319072_133341896	0/0	t0012	1607	2	2	0	0	0	0	copy fasta	CALY	chr10	133319072	133341896
CALY_chr10_133319072_133341896	0/0	t0013	1607	1	0	1	0	0	0	copy fasta	CALY	chr10	133319072	133341896
CALY_chr10_133319072_133341896	0/0	t0014	1607	1	0	1	0	0	0	copy fasta	CALY	chr10	133319072	133341896
CALY_chr10_133319072_133341896	0/0	t0015	1574	1	1	0	0	0	0	copy fasta	CALY	chr10	133319072	133341896
CALY_chr10_133319072_133341896	0/0	t0016	1607	1	0	0	0	1	0	copy fasta	CALY	chr10	133319072	133341896
CALY_chr10_133319072_133341896	0/0	t0017	1607	1	0	1	0	0	0	copy fasta	CALY	chr10	133319072	133341896
CALY_chr10_133319072_133341896	0/0	t0018	1584	1	1	0	0	0	0	copy fasta	CALY	chr10	133319072	133341896
CALY_chr10_133319072_133341896	0/0	t0019	1587	1	1	0	0	0	0	copy fasta	CALY	chr10	133319072	133341896
CALY_chr10_133319072_133341896	0/0	t0020	1555	1	0	1	0	0	0	copy fasta	CALY	chr10	133319072	133341896
CALY_chr10_133319072_133341896	0/0	t0021	1607	1	0	1	0	0	0	copy fasta	CALY	chr10	133319072	133341896
CALY_chr10_133319072_133341896	0/0	t0022	1574	1	0	0	1	0	0	copy fasta	CALY	chr10	133319072	133341896
CAMK1D_chr10_12344547_12840545	0/0	t0001	6909	15	1	2	12	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0002	6909	12	4	3	0	1	4	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0003	6939	9	1	6	1	1	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0004	6931	7	0	0	4	1	2	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0005	6944	7	0	4	3	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0006	6942	6	0	3	3	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0007	6946	4	0	1	3	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0008	6934	4	4	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0009	6946	4	0	0	3	0	1	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0010	6933	3	2	1	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0011	6909	3	3	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0012	6948	3	0	0	3	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0013	6909	3	3	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0014	6909	3	0	3	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0015	6936	3	0	0	3	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0016	6938	3	2	0	1	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0017	6948	3	0	1	0	0	2	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0018	6908	3	0	0	1	1	1	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0019	6943	3	2	1	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0020	6947	3	3	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545