JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CAMK1D_chr10_12344547_12840545	0/0	t0021	6931	2	0	0	2	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0022	6909	2	0	0	0	0	2	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0023	6912	2	0	0	0	0	2	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0024	6920	2	0	2	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0025	6933	2	2	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0026	6932	2	2	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0027	6933	2	2	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0028	6941	2	0	1	1	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0029	6945	2	0	0	2	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0030	6949	2	0	0	1	0	1	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0031	6925	2	1	0	0	1	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0032	6922	2	2	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0033	6925	2	0	0	2	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0034	6924	2	0	1	0	0	1	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0035	6901	2	2	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0036	6908	2	0	1	0	0	1	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0037	6911	2	0	0	0	0	2	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0038	6907	2	0	0	2	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0039	6939	2	2	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0040	6942	2	2	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0041	6943	1	0	1	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0042	6927	1	0	1	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0043	6947	1	0	0	1	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0044	6939	1	1	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0045	6943	1	1	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0046	6944	1	0	0	1	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0047	6945	1	0	0	1	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0048	6909	1	0	0	1	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0049	6911	1	0	0	0	0	1	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0050	6911	1	0	0	0	0	1	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0051	6907	1	0	1	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0052	6916	1	0	0	0	0	1	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0053	6916	1	0	1	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0054	6918	1	1	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0055	6919	1	0	1	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0056	6923	1	1	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0057	6932	1	1	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0058	6932	1	0	0	1	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0059	6931	1	0	0	0	0	1	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0060	6930	1	0	0	0	0	1	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0061	6931	1	1	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0062	6931	1	1	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0063	6932	1	0	0	0	1	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0064	6934	1	1	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0065	6935	1	1	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0066	6935	1	0	0	1	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0067	6937	1	0	0	1	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0068	6937	1	1	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0069	6940	1	0	1	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0070	6939	1	0	1	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545