JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CAMK1D_chr10_12344547_12840545	0/0	t0071	6939	1	0	1	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0072	6942	1	0	0	1	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0073	6940	1	0	0	1	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0074	6944	1	0	0	1	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0075	6945	1	0	0	1	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0076	6944	1	0	0	1	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0077	6944	1	0	0	1	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0078	6943	1	0	0	1	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0079	6942	1	0	1	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0080	6945	1	0	0	1	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0081	6950	1	0	0	0	0	1	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0082	6952	1	0	0	0	0	1	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0083	6945	1	0	0	1	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0084	6939	1	1	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0085	6943	1	1	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0086	6926	1	0	0	1	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0087	6925	1	0	1	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0088	6909	1	1	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0089	6908	1	1	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0090	6908	1	1	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0091	6911	1	1	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0092	6911	1	1	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0093	6911	1	1	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0094	6911	1	0	0	0	0	1	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0095	6917	1	0	0	0	0	1	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0096	6907	1	0	0	1	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0097	6908	1	0	0	1	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0098	6897	1	1	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0099	6946	1	0	0	1	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0100	6907	1	0	0	1	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0101	6906	1	0	0	1	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0102	6928	1	1	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0103	6923	1	1	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0104	6943	1	1	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0105	6949	1	1	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0106	6945	1	1	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0107	6944	1	1	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0108	6923	1	1	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0109	6925	1	1	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0110	6944	1	0	0	1	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0111	6908	1	1	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0112	6929	1	1	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	t0113	6948	1	1	0	0	0	0	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1G_chr1_209578714_209618939	1/1	t0001	1026	331	55	53	178	12	31	copy fasta	CAMK1G	chr1	209578714	209618939
CAMK1G_chr1_209578714_209618939	0/0	t0002	1026	100	36	25	24	6	9	copy fasta	CAMK1G	chr1	209578714	209618939
CAMK1G_chr1_209578714_209618939	0/0	t0003	1026	4	4	0	0	0	0	copy fasta	CAMK1G	chr1	209578714	209618939
CAMK1G_chr1_209578714_209618939	0/0	t0004	1026	3	0	0	0	0	3	copy fasta	CAMK1G	chr1	209578714	209618939
CAMK1G_chr1_209578714_209618939	0/0	t0005	1026	2	0	0	2	0	0	copy fasta	CAMK1G	chr1	209578714	209618939
CAMK1G_chr1_209578714_209618939	0/0	t0006	1026	2	2	0	0	0	0	copy fasta	CAMK1G	chr1	209578714	209618939
CAMK1G_chr1_209578714_209618939	0/0	t0007	1026	1	1	0	0	0	0	copy fasta	CAMK1G	chr1	209578714	209618939