JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CAMK1G_chr1_209578714_209618939	0/0	t0008	1026	1	0	0	0	0	1	copy fasta	CAMK1G	chr1	209578714	209618939
CAMK1G_chr1_209578714_209618939	0/0	t0009	1026	1	0	1	0	0	0	copy fasta	CAMK1G	chr1	209578714	209618939
CAMK1G_chr1_209578714_209618939	0/0	t0010	1026	1	0	1	0	0	0	copy fasta	CAMK1G	chr1	209578714	209618939
CAMK1_chr3_9752347_9774947	1/1	t0001	341	360	65	64	187	12	30	copy fasta	CAMK1	chr3	9752347	9774947
CAMK1_chr3_9752347_9774947	0/0	t0002	341	58	29	10	9	4	6	copy fasta	CAMK1	chr3	9752347	9774947
CAMK1_chr3_9752347_9774947	0/0	t0003	341	3	0	0	3	0	0	copy fasta	CAMK1	chr3	9752347	9774947
CAMK1_chr3_9752347_9774947	0/0	t0004	341	2	2	0	0	0	0	copy fasta	CAMK1	chr3	9752347	9774947
CAMK1_chr3_9752347_9774947	0/0	t0005	341	2	0	0	0	0	2	copy fasta	CAMK1	chr3	9752347	9774947
CAMK1_chr3_9752347_9774947	0/0	t0006	341	1	0	0	1	0	0	copy fasta	CAMK1	chr3	9752347	9774947
CAMK2A_chr5_150214491_150294773	0/0	t0001	3364	100	5	22	63	4	6	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/1	t0002	3370	25	4	5	11	0	4	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0003	3373	20	1	9	2	3	5	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0004	3369	11	11	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0005	3349	10	0	0	9	0	1	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0006	3350	8	0	0	8	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0007	3365	8	0	1	4	1	2	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0008	3349	7	0	0	6	0	1	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0009	3368	7	7	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0010	3365	7	1	1	5	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	1/0	t0011	3368	6	0	3	0	1	1	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0012	3370	5	0	4	0	1	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0013	3368	5	0	5	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0014	3369	5	5	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0015	3363	4	4	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0016	3368	4	0	0	4	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0017	3367	3	3	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0018	3367	3	3	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0019	3363	3	0	0	1	0	2	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0020	3370	3	0	0	1	1	1	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0021	3350	3	0	0	2	0	1	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0022	3374	3	2	1	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0023	3370	3	0	0	3	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0024	3369	3	3	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0025	3371	3	2	1	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0026	3370	2	2	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0027	3364	2	1	1	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0028	3350	2	0	0	2	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0029	3348	2	0	0	1	0	1	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0030	3368	2	2	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0031	3370	2	2	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0032	3374	2	2	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0033	3370	2	2	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0034	3369	2	2	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0035	3370	2	2	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0036	3368	2	1	1	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0037	3371	2	2	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0038	3367	2	2	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0039	3350	2	0	0	1	0	1	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0040	3368	1	1	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0041	3373	1	0	0	1	0	0	copy fasta	CAMK2A	chr5	150214491	150294773