JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CAMK2A_chr5_150214491_150294773	0/0	t0042	3367	1	1	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0043	3382	1	1	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0044	3362	1	0	1	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0045	3368	1	1	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0046	3369	1	1	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0047	3374	1	1	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0048	3364	1	0	1	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0049	3369	1	1	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0050	3369	1	1	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0051	3378	1	0	0	1	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0052	3367	1	1	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0053	3362	1	1	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0054	3350	1	0	0	1	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0055	3367	1	1	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0056	3363	1	1	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0057	3368	1	1	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0058	3350	1	0	0	1	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0059	3364	1	0	0	0	0	1	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0060	3368	1	1	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0061	3369	1	1	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0062	3349	1	0	0	1	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0063	3349	1	0	0	1	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0064	3366	1	0	0	1	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0065	3366	1	0	0	1	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0066	3364	1	0	0	1	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0067	3364	1	0	0	1	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0068	3369	1	1	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0069	3369	1	0	0	1	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0070	3365	1	0	0	1	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0071	3369	1	0	1	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0072	3369	1	1	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0073	3370	1	0	0	0	1	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0074	3364	1	0	0	0	0	1	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0075	3351	1	0	0	1	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0076	3350	1	0	0	1	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0077	3368	1	1	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0078	3352	1	0	0	0	0	1	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0079	3367	1	0	0	1	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0080	3366	1	0	1	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0081	3369	1	1	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0082	3350	1	0	0	0	0	1	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0083	3368	1	1	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0084	3365	1	0	0	0	0	1	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0085	3368	1	1	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0086	3368	1	1	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0087	3368	1	1	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0088	3368	1	1	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0089	3370	1	1	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	t0090	3368	1	0	0	0	0	1	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2B_chr7_44212154_44330594	0/0	t0001	2544	46	5	6	21	1	13	copy fasta	CAMK2B	chr7	44212154	44330594