JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CAMK2B_chr7_44212154_44330594	0/0	t0002	2545	39	22	8	2	2	5	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/1	t0003	2544	36	6	9	11	3	6	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	1/0	t0004	2545	34	16	5	6	2	4	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	t0005	2544	14	0	3	11	0	0	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	t0006	2545	12	0	4	3	4	1	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	t0007	2544	11	0	3	8	0	0	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	t0008	2546	9	4	1	3	0	1	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	t0009	2545	8	0	3	2	1	2	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	t0010	2546	5	4	1	0	0	0	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	t0011	2544	4	4	0	0	0	0	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	t0012	2547	2	0	1	0	0	1	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	t0013	2546	2	0	1	1	0	0	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	t0014	2545	2	2	0	0	0	0	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	t0015	2545	2	0	2	0	0	0	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	t0016	2544	1	0	0	0	0	1	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	t0017	2546	1	0	1	0	0	0	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	t0018	2544	1	0	0	0	0	1	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	t0019	2544	1	1	0	0	0	0	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	t0020	2544	1	0	0	1	0	0	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	t0021	2544	1	0	0	0	0	1	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	t0022	2547	1	0	0	0	0	1	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	t0023	2545	1	1	0	0	0	0	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	t0024	2545	1	1	0	0	0	0	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	t0025	2545	1	0	1	0	0	0	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	t0026	2544	1	0	0	0	1	0	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	t0027	2545	1	0	0	1	0	0	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	t0028	2543	1	0	0	0	0	1	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	t0029	2545	1	0	1	0	0	0	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	t0030	2545	1	0	0	1	0	0	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	t0031	2546	1	0	0	1	0	0	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2D_chr4_113446032_113766738	0/0	t0001	4185	30	2	1	19	1	7	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2D_chr4_113446032_113766738	0/0	t0002	4185	23	1	2	19	0	1	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2D_chr4_113446032_113766738	1/0	t0003	4184	21	1	6	13	0	0	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2D_chr4_113446032_113766738	0/0	t0004	4183	21	19	2	0	0	0	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2D_chr4_113446032_113766738	0/0	t0005	4183	17	13	2	1	0	1	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2D_chr4_113446032_113766738	0/0	t0006	4183	12	0	0	12	0	0	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2D_chr4_113446032_113766738	0/0	t0007	4185	11	10	1	0	0	0	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2D_chr4_113446032_113766738	0/0	t0008	4184	11	0	1	8	0	2	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2D_chr4_113446032_113766738	0/0	t0009	4184	10	1	3	4	0	2	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2D_chr4_113446032_113766738	0/0	t0010	4184	8	1	2	4	0	1	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2D_chr4_113446032_113766738	0/0	t0011	4181	8	1	3	3	0	1	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2D_chr4_113446032_113766738	0/0	t0012	4185	7	0	1	6	0	0	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2D_chr4_113446032_113766738	0/0	t0013	4183	5	0	0	5	0	0	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2D_chr4_113446032_113766738	0/0	t0014	4184	5	5	0	0	0	0	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2D_chr4_113446032_113766738	0/0	t0015	4183	4	0	0	4	0	0	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2D_chr4_113446032_113766738	0/0	t0016	4183	3	1	0	1	0	1	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2D_chr4_113446032_113766738	0/1	t0017	4183	3	0	1	0	0	1	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2D_chr4_113446032_113766738	0/0	t0018	4185	3	0	3	0	0	0	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2D_chr4_113446032_113766738	0/0	t0019	4185	3	0	0	3	0	0	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2D_chr4_113446032_113766738	0/0	t0020	4182	2	2	0	0	0	0	copy fasta	CAMK2D	chr4	113446032	113766738