JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CAMK2D_chr4_113446032_113766738	0/0	t0071	4181	1	0	0	1	0	0	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2D_chr4_113446032_113766738	0/0	t0072	4183	1	0	0	1	0	0	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2D_chr4_113446032_113766738	0/0	t0073	4183	1	0	0	1	0	0	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2D_chr4_113446032_113766738	0/0	t0074	4183	1	0	1	0	0	0	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2D_chr4_113446032_113766738	0/0	t0075	4183	1	0	0	0	0	1	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2D_chr4_113446032_113766738	0/0	t0076	4185	1	0	0	1	0	0	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2D_chr4_113446032_113766738	0/0	t0077	4186	1	0	0	1	0	0	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2D_chr4_113446032_113766738	0/0	t0078	4184	1	0	0	1	0	0	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2G_chr10_73807501_73879555	1/1	t0001	2112	216	54	28	101	7	24	copy fasta	CAMK2G	chr10	73807501	73879555
CAMK2G_chr10_73807501_73879555	0/0	t0002	2112	42	7	6	23	1	5	copy fasta	CAMK2G	chr10	73807501	73879555
CAMK2G_chr10_73807501_73879555	0/0	t0003	2112	4	3	1	0	0	0	copy fasta	CAMK2G	chr10	73807501	73879555
CAMK2G_chr10_73807501_73879555	0/0	t0004	2112	3	3	0	0	0	0	copy fasta	CAMK2G	chr10	73807501	73879555
CAMK2G_chr10_73807501_73879555	0/0	t0005	2112	3	3	0	0	0	0	copy fasta	CAMK2G	chr10	73807501	73879555
CAMK2G_chr10_73807501_73879555	0/0	t0006	2112	2	0	2	0	0	0	copy fasta	CAMK2G	chr10	73807501	73879555
CAMK2G_chr10_73807501_73879555	0/0	t0007	2112	2	0	0	2	0	0	copy fasta	CAMK2G	chr10	73807501	73879555
CAMK2G_chr10_73807501_73879555	0/0	t0008	2112	2	0	0	2	0	0	copy fasta	CAMK2G	chr10	73807501	73879555
CAMK2G_chr10_73807501_73879555	0/0	t0009	2112	1	0	0	1	0	0	copy fasta	CAMK2G	chr10	73807501	73879555
CAMK2G_chr10_73807501_73879555	0/0	t0010	2112	1	0	0	1	0	0	copy fasta	CAMK2G	chr10	73807501	73879555
CAMK2G_chr10_73807501_73879555	0/0	t0011	2112	1	0	0	0	0	1	copy fasta	CAMK2G	chr10	73807501	73879555
CAMK2G_chr10_73807501_73879555	0/0	t0012	2112	1	0	0	1	0	0	copy fasta	CAMK2G	chr10	73807501	73879555
CAMK2G_chr10_73807501_73879555	0/0	t0013	2112	1	0	0	1	0	0	copy fasta	CAMK2G	chr10	73807501	73879555
CAMK2G_chr10_73807501_73879555	0/0	t0014	2112	1	0	1	0	0	0	copy fasta	CAMK2G	chr10	73807501	73879555
CAMK2N1_chr1_20477391_20491210	0/0	t0001	2096	97	6	20	58	3	10	copy fasta	CAMK2N1	chr1	20477391	20491210
CAMK2N1_chr1_20477391_20491210	0/0	t0002	2092	92	27	12	43	5	5	copy fasta	CAMK2N1	chr1	20477391	20491210
CAMK2N1_chr1_20477391_20491210	0/0	t0003	2094	63	9	16	32	1	5	copy fasta	CAMK2N1	chr1	20477391	20491210
CAMK2N1_chr1_20477391_20491210	1/1	t0004	2090	45	19	8	5	3	8	copy fasta	CAMK2N1	chr1	20477391	20491210
CAMK2N1_chr1_20477391_20491210	0/0	t0005	2088	28	10	6	7	1	4	copy fasta	CAMK2N1	chr1	20477391	20491210
CAMK2N1_chr1_20477391_20491210	0/0	t0006	2100	23	5	3	11	1	3	copy fasta	CAMK2N1	chr1	20477391	20491210
CAMK2N1_chr1_20477391_20491210	0/0	t0007	2098	17	2	0	11	1	3	copy fasta	CAMK2N1	chr1	20477391	20491210
CAMK2N1_chr1_20477391_20491210	0/0	t0008	2102	11	1	0	8	0	2	copy fasta	CAMK2N1	chr1	20477391	20491210
CAMK2N1_chr1_20477391_20491210	0/0	t0009	2088	8	0	5	0	3	0	copy fasta	CAMK2N1	chr1	20477391	20491210
CAMK2N1_chr1_20477391_20491210	0/0	t0010	2093	5	1	1	1	0	2	copy fasta	CAMK2N1	chr1	20477391	20491210
CAMK2N1_chr1_20477391_20491210	0/0	t0011	2104	4	0	0	4	0	0	copy fasta	CAMK2N1	chr1	20477391	20491210
CAMK2N1_chr1_20477391_20491210	0/0	t0012	2072	4	0	0	4	0	0	copy fasta	CAMK2N1	chr1	20477391	20491210
CAMK2N1_chr1_20477391_20491210	0/0	t0013	2094	4	1	2	1	0	0	copy fasta	CAMK2N1	chr1	20477391	20491210
CAMK2N1_chr1_20477391_20491210	0/0	t0014	2095	3	0	2	0	0	1	copy fasta	CAMK2N1	chr1	20477391	20491210
CAMK2N1_chr1_20477391_20491210	0/0	t0015	2092	3	1	0	1	0	1	copy fasta	CAMK2N1	chr1	20477391	20491210
CAMK2N1_chr1_20477391_20491210	0/0	t0016	2100	2	1	1	0	0	0	copy fasta	CAMK2N1	chr1	20477391	20491210
CAMK2N1_chr1_20477391_20491210	0/0	t0017	2090	2	0	0	2	0	0	copy fasta	CAMK2N1	chr1	20477391	20491210
CAMK2N1_chr1_20477391_20491210	0/0	t0018	2096	1	1	0	0	0	0	copy fasta	CAMK2N1	chr1	20477391	20491210
CAMK2N1_chr1_20477391_20491210	0/0	t0019	2092	1	0	0	0	0	1	copy fasta	CAMK2N1	chr1	20477391	20491210
CAMK2N1_chr1_20477391_20491210	0/0	t0020	2096	1	0	0	1	0	0	copy fasta	CAMK2N1	chr1	20477391	20491210
CAMK2N1_chr1_20477391_20491210	0/0	t0021	2092	1	0	0	0	0	1	copy fasta	CAMK2N1	chr1	20477391	20491210
CAMK2N1_chr1_20477391_20491210	0/0	t0022	2088	1	0	0	1	0	0	copy fasta	CAMK2N1	chr1	20477391	20491210
CAMK2N1_chr1_20477391_20491210	0/0	t0023	2098	1	1	0	0	0	0	copy fasta	CAMK2N1	chr1	20477391	20491210
CAMK2N1_chr1_20477391_20491210	0/0	t0024	2093	1	0	0	1	0	0	copy fasta	CAMK2N1	chr1	20477391	20491210
CAMK2N1_chr1_20477391_20491210	0/0	t0025	2098	1	0	0	0	0	1	copy fasta	CAMK2N1	chr1	20477391	20491210
CAMK2N1_chr1_20477391_20491210	0/0	t0026	2096	1	0	0	1	0	0	copy fasta	CAMK2N1	chr1	20477391	20491210
CAMK2N1_chr1_20477391_20491210	0/0	t0027	2090	1	1	0	0	0	0	copy fasta	CAMK2N1	chr1	20477391	20491210
CAMK2N1_chr1_20477391_20491210	0/0	t0028	2096	1	0	0	0	0	1	copy fasta	CAMK2N1	chr1	20477391	20491210