JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CAMK2N2_chr3_184254213_184266553	1/1	t0001	1213	222	64	37	78	10	31	copy fasta	CAMK2N2	chr3	184254213	184266553
CAMK2N2_chr3_184254213_184266553	0/0	t0002	1213	92	2	16	61	4	9	copy fasta	CAMK2N2	chr3	184254213	184266553
CAMK2N2_chr3_184254213_184266553	0/0	t0003	1213	22	6	5	11	0	0	copy fasta	CAMK2N2	chr3	184254213	184266553
CAMK2N2_chr3_184254213_184266553	0/0	t0004	1213	17	15	2	0	0	0	copy fasta	CAMK2N2	chr3	184254213	184266553
CAMK2N2_chr3_184254213_184266553	0/0	t0005	1213	6	0	0	6	0	0	copy fasta	CAMK2N2	chr3	184254213	184266553
CAMK2N2_chr3_184254213_184266553	0/0	t0006	1213	5	0	5	0	0	0	copy fasta	CAMK2N2	chr3	184254213	184266553
CAMK2N2_chr3_184254213_184266553	0/0	t0007	1213	2	2	0	0	0	0	copy fasta	CAMK2N2	chr3	184254213	184266553
CAMK2N2_chr3_184254213_184266553	0/0	t0008	1213	2	2	0	0	0	0	copy fasta	CAMK2N2	chr3	184254213	184266553
CAMK2N2_chr3_184254213_184266553	0/0	t0009	1213	2	0	0	2	0	0	copy fasta	CAMK2N2	chr3	184254213	184266553
CAMK2N2_chr3_184254213_184266553	0/0	t0010	1213	2	0	0	2	0	0	copy fasta	CAMK2N2	chr3	184254213	184266553
CAMK2N2_chr3_184254213_184266553	0/0	t0011	1213	1	0	0	0	1	0	copy fasta	CAMK2N2	chr3	184254213	184266553
CAMK2N2_chr3_184254213_184266553	0/0	t0012	1213	1	0	0	0	1	0	copy fasta	CAMK2N2	chr3	184254213	184266553
CAMK2N2_chr3_184254213_184266553	0/0	t0013	1213	1	1	0	0	0	0	copy fasta	CAMK2N2	chr3	184254213	184266553
CAMK2N2_chr3_184254213_184266553	0/0	t0014	1213	1	0	0	1	0	0	copy fasta	CAMK2N2	chr3	184254213	184266553
CAMK2N2_chr3_184254213_184266553	0/0	t0015	1213	1	0	0	1	0	0	copy fasta	CAMK2N2	chr3	184254213	184266553
CAMK2N2_chr3_184254213_184266553	0/0	t0016	1213	1	0	1	0	0	0	copy fasta	CAMK2N2	chr3	184254213	184266553
CAMK2N2_chr3_184254213_184266553	0/0	t0017	1213	1	0	0	1	0	0	copy fasta	CAMK2N2	chr3	184254213	184266553
CAMK2N2_chr3_184254213_184266553	0/0	t0018	1213	1	0	0	1	0	0	copy fasta	CAMK2N2	chr3	184254213	184266553
CAMK4_chr5_111219384_111499886	0/0	t0001	10529	11	1	1	7	0	2	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0002	10527	6	2	0	2	1	1	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0003	10517	6	0	2	0	1	3	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0004	10531	4	0	0	4	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0005	10527	4	0	0	3	0	1	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0006	10525	4	0	2	2	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0007	10517	4	0	2	1	0	1	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/1	t0008	10527	3	0	1	1	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0009	10527	3	0	0	2	0	1	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0010	10523	3	2	1	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0011	10517	3	3	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0012	10511	3	0	0	3	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0013	10521	3	3	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0014	10535	2	0	0	0	2	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0015	10533	2	0	0	2	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0016	10531	2	2	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0017	10529	2	0	0	2	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0018	10529	2	2	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0019	10529	2	0	1	0	0	1	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0020	10528	2	2	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0021	10527	2	0	2	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0022	10527	2	0	2	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0023	10527	2	0	0	2	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0024	10527	2	0	0	1	1	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0025	10525	2	1	0	0	0	1	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0026	10525	2	0	0	1	0	1	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0027	10525	2	0	1	0	0	1	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0028	10525	2	1	1	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0029	10523	2	0	0	2	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	1/0	t0030	10521	2	0	0	1	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0031	10521	2	1	1	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0032	10521	2	0	0	1	0	1	copy fasta	CAMK4	chr5	111219384	111499886