JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CAMK4_chr5_111219384_111499886	0/0	t0033	10519	2	0	0	2	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0034	10520	2	2	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0035	10519	2	2	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0036	10511	2	0	0	2	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0037	10511	2	0	0	2	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0038	10532	2	0	0	0	2	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0039	10519	2	1	1	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0040	10521	2	2	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0041	10534	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0042	10531	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0043	10524	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0044	10521	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0045	10519	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0046	10529	1	0	0	1	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0047	10537	1	0	0	1	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0048	10535	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0049	10533	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0050	10533	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0051	10533	1	0	0	1	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0052	10533	1	0	0	0	0	1	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0053	10531	1	0	1	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0054	10531	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0055	10533	1	0	0	0	0	1	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0056	10531	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0057	10531	1	0	0	1	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0058	10531	1	0	0	0	0	1	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0059	10529	1	0	0	1	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0060	10529	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0061	10529	1	0	0	0	0	1	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0062	10530	1	0	0	1	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0063	10529	1	0	0	1	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0064	10529	1	0	1	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0065	10529	1	0	0	1	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0066	10529	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0067	10529	1	0	0	0	1	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0068	10529	1	0	0	0	0	1	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0069	10529	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0070	10529	1	0	1	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0071	10529	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0072	10529	1	0	1	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0073	10529	1	0	0	1	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0074	10527	1	0	0	1	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0075	10528	1	0	0	1	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0076	10527	1	0	0	1	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0077	10527	1	0	0	1	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0078	10527	1	0	0	1	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0079	10527	1	0	1	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0080	10527	1	0	0	0	0	1	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0081	10527	1	0	0	0	0	1	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0082	10527	1	0	0	1	0	0	copy fasta	CAMK4	chr5	111219384	111499886