Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADAL_chr15_43325672_43359569	0/0	t0011	3197	5	0	0	5	0	0	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	t0012	3197	3	3	0	0	0	0	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	t0013	3197	2	2	0	0	0	0	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	t0014	3197	2	2	0	0	0	0	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	t0015	3197	1	0	0	0	0	1	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	t0016	3201	1	0	0	0	0	1	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	t0017	3197	1	0	0	0	0	1	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	t0018	3201	1	0	0	1	0	0	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	t0019	3197	1	0	0	0	0	1	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	t0020	3201	1	0	0	0	0	1	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	t0021	3201	1	0	1	0	0	0	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	t0022	3197	1	1	0	0	0	0	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	t0023	3201	1	0	0	1	0	0	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	t0024	3200	1	0	0	0	1	0	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	t0025	3200	1	0	0	1	0	0	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	t0026	3197	1	1	0	0	0	0	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	t0027	3197	1	1	0	0	0	0	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	t0028	3197	1	1	0	0	0	0	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	t0029	3197	1	0	1	0	0	0	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	t0030	3197	1	1	0	0	0	0	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	t0031	3201	1	1	0	0	0	0	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	t0032	3197	1	1	0	0	0	0	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	t0033	3201	1	0	0	0	1	0	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	t0034	3196	1	0	0	1	0	0	copy fasta	ADAL	chr15	43325672	43359569
ADAL_chr15_43325672_43359569	0/0	t0035	3200	1	0	1	0	0	0	copy fasta	ADAL	chr15	43325672	43359569
ADAM10_chr15_58583809_58754707	0/0	t0001	8888	65	3	8	46	1	7	copy fasta	ADAM10	chr15	58583809	58754707
ADAM10_chr15_58583809_58754707	0/0	t0002	8888	20	4	2	10	1	3	copy fasta	ADAM10	chr15	58583809	58754707
ADAM10_chr15_58583809_58754707	0/0	t0003	8900	15	1	1	12	0	1	copy fasta	ADAM10	chr15	58583809	58754707
ADAM10_chr15_58583809_58754707	0/0	t0004	8901	14	1	4	5	0	4	copy fasta	ADAM10	chr15	58583809	58754707
ADAM10_chr15_58583809_58754707	0/0	t0005	8899	14	0	3	9	0	2	copy fasta	ADAM10	chr15	58583809	58754707
ADAM10_chr15_58583809_58754707	1/0	t0006	8912	12	7	1	1	0	2	copy fasta	ADAM10	chr15	58583809	58754707
ADAM10_chr15_58583809_58754707	0/0	t0007	8898	11	0	0	11	0	0	copy fasta	ADAM10	chr15	58583809	58754707
ADAM10_chr15_58583809_58754707	0/0	t0008	8902	7	0	1	6	0	0	copy fasta	ADAM10	chr15	58583809	58754707
ADAM10_chr15_58583809_58754707	0/0	t0009	8888	7	0	0	7	0	0	copy fasta	ADAM10	chr15	58583809	58754707
ADAM10_chr15_58583809_58754707	0/0	t0010	8889	7	0	1	6	0	0	copy fasta	ADAM10	chr15	58583809	58754707
ADAM10_chr15_58583809_58754707	0/0	t0011	8898	5	0	0	4	1	0	copy fasta	ADAM10	chr15	58583809	58754707
ADAM10_chr15_58583809_58754707	0/0	t0012	8912	5	0	3	0	0	2	copy fasta	ADAM10	chr15	58583809	58754707
ADAM10_chr15_58583809_58754707	0/0	t0013	8899	4	0	0	4	0	0	copy fasta	ADAM10	chr15	58583809	58754707
ADAM10_chr15_58583809_58754707	0/0	t0014	8890	4	2	1	0	0	1	copy fasta	ADAM10	chr15	58583809	58754707
ADAM10_chr15_58583809_58754707	0/0	t0015	8889	3	3	0	0	0	0	copy fasta	ADAM10	chr15	58583809	58754707
ADAM10_chr15_58583809_58754707	0/0	t0016	8888	3	3	0	0	0	0	copy fasta	ADAM10	chr15	58583809	58754707
ADAM10_chr15_58583809_58754707	0/0	t0017	8904	3	0	0	3	0	0	copy fasta	ADAM10	chr15	58583809	58754707
ADAM10_chr15_58583809_58754707	0/0	t0018	8877	3	3	0	0	0	0	copy fasta	ADAM10	chr15	58583809	58754707
ADAM10_chr15_58583809_58754707	0/0	t0019	8907	3	0	0	3	0	0	copy fasta	ADAM10	chr15	58583809	58754707
ADAM10_chr15_58583809_58754707	0/0	t0020	8897	3	0	0	3	0	0	copy fasta	ADAM10	chr15	58583809	58754707
ADAM10_chr15_58583809_58754707	0/0	t0021	8896	3	0	0	3	0	0	copy fasta	ADAM10	chr15	58583809	58754707
ADAM10_chr15_58583809_58754707	0/0	t0022	8902	3	1	1	1	0	0	copy fasta	ADAM10	chr15	58583809	58754707
ADAM10_chr15_58583809_58754707	0/0	t0023	8901	3	0	0	2	0	1	copy fasta	ADAM10	chr15	58583809	58754707
ADAM10_chr15_58583809_58754707	0/0	t0024	8887	3	0	1	1	0	1	copy fasta	ADAM10	chr15	58583809	58754707
ADAM10_chr15_58583809_58754707	0/0	t0025	8887	2	2	0	0	0	0	copy fasta	ADAM10	chr15	58583809	58754707