JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CAMK4_chr5_111219384_111499886	0/0	t0083	10527	1	0	0	1	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0084	10527	1	0	0	1	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0085	10525	1	0	1	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0086	10526	1	0	0	1	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0087	10525	1	0	0	1	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0088	10525	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0089	10527	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0090	10527	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0091	10525	1	0	0	1	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0092	10525	1	0	0	1	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0093	10525	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0094	10525	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0095	10525	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0096	10525	1	0	1	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0097	10525	1	0	1	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0098	10523	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0099	10523	1	0	1	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0100	10523	1	0	0	1	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0101	10526	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0102	10525	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0103	10523	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0104	10523	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0105	10523	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0106	10521	1	0	0	1	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0107	10521	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0108	10521	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0109	10521	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0110	10521	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0111	10519	1	0	1	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0112	10519	1	0	0	1	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0113	10519	1	0	1	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0114	10517	1	0	0	1	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0115	10519	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0116	10517	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0117	10518	1	0	0	0	0	1	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0118	10517	1	0	1	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0119	10517	1	0	0	0	0	1	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0120	10517	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0121	10517	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0122	10515	1	0	1	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0123	10515	1	0	0	0	0	1	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0124	10515	1	0	0	0	1	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0125	10515	1	0	1	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0126	10515	1	0	1	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0127	10515	1	0	0	0	0	1	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0128	10515	1	0	1	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0129	10513	1	0	0	0	0	1	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0130	10513	1	0	0	0	1	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0131	10515	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0132	10516	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886