JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CAMK4_chr5_111219384_111499886	0/0	t0133	10513	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0134	10513	1	0	0	1	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0135	10511	1	0	0	1	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0136	10511	1	0	0	1	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0137	10511	1	0	0	1	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0138	10511	1	0	0	1	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0139	10511	1	0	0	1	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0140	10511	1	0	0	1	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0141	10511	1	0	0	0	0	1	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0142	10511	1	0	0	0	0	1	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0143	10507	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0144	10507	1	0	1	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0145	10505	1	0	0	1	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0146	10531	1	0	1	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0147	10527	1	0	1	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0148	10527	1	0	0	0	0	1	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0149	10527	1	0	0	0	0	1	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0150	10525	1	0	1	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0151	10525	1	0	1	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0152	10511	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0153	10527	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0154	10525	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0155	10517	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0156	10525	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0157	10530	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0158	10529	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0159	10525	1	0	1	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0160	10526	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0161	10523	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0162	10523	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0163	10523	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0164	10521	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0165	10519	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0166	10519	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0167	10517	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0168	10511	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0169	10519	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0170	10527	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0171	10519	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0172	10517	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0173	10521	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0174	10519	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	t0175	10523	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMKK1_chr17_3855315_3898053	1/0	t0001	2055	83	11	17	30	6	18	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	t0002	2055	66	0	11	40	1	14	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	t0003	2055	39	3	3	26	3	4	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	t0004	2055	37	0	2	31	0	4	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	t0005	2055	24	0	16	8	0	0	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/1	t0006	2055	22	12	6	0	1	2	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	t0007	2055	21	0	0	18	0	3	copy fasta	CAMKK1	chr17	3855315	3898053