JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CAMKK1_chr17_3855315_3898053	0/0	t0058	2060	1	1	0	0	0	0	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	t0059	2060	1	0	0	0	1	0	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	t0060	2065	1	0	0	1	0	0	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	t0061	2065	1	0	0	0	0	1	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	t0062	2065	1	0	1	0	0	0	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	t0063	2065	1	1	0	0	0	0	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	t0064	2065	1	1	0	0	0	0	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	t0065	2055	1	1	0	0	0	0	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	t0066	2055	1	1	0	0	0	0	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	t0067	2055	1	1	0	0	0	0	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	t0068	2055	1	1	0	0	0	0	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	t0069	2055	1	1	0	0	0	0	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	t0070	2055	1	0	1	0	0	0	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK2_chr12_121232692_121301709	1/1	t0001	3139	161	29	34	65	7	24	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	t0002	3142	87	22	18	39	3	5	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	t0003	3139	15	6	1	2	2	4	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	t0004	3142	14	0	0	14	0	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	t0005	3141	7	7	0	0	0	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	t0006	3139	6	5	1	0	0	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	t0007	3139	6	0	0	6	0	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	t0008	3139	6	0	0	1	0	5	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	t0009	3141	3	3	0	0	0	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	t0010	3142	3	3	0	0	0	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	t0011	3142	3	2	1	0	0	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	t0012	3139	3	0	1	0	2	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	t0013	3139	3	3	0	0	0	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	t0014	3138	3	0	3	0	0	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	t0015	3139	2	0	0	0	0	2	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	t0016	3142	1	1	0	0	0	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	t0017	3139	1	1	0	0	0	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	t0018	3139	1	0	1	0	0	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	t0019	3139	1	0	0	1	0	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	t0020	3139	1	0	1	0	0	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	t0021	3139	1	1	0	0	0	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	t0022	3138	1	0	1	0	0	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	t0023	3139	1	1	0	0	0	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKMT_chr2_44356947_44777592	0/0	t0001	541	145	45	20	61	1	18	copy fasta	CAMKMT	chr2	44356947	44777592
CAMKMT_chr2_44356947_44777592	0/0	t0002	541	28	16	7	0	1	4	copy fasta	CAMKMT	chr2	44356947	44777592
CAMKMT_chr2_44356947_44777592	0/0	t0003	542	12	10	2	0	0	0	copy fasta	CAMKMT	chr2	44356947	44777592
CAMKMT_chr2_44356947_44777592	0/0	t0004	541	5	4	1	0	0	0	copy fasta	CAMKMT	chr2	44356947	44777592
CAMKMT_chr2_44356947_44777592	0/0	t0005	542	4	4	0	0	0	0	copy fasta	CAMKMT	chr2	44356947	44777592
CAMKMT_chr2_44356947_44777592	0/0	t0006	541	2	2	0	0	0	0	copy fasta	CAMKMT	chr2	44356947	44777592
CAMKMT_chr2_44356947_44777592	0/0	t0007	541	2	1	0	1	0	0	copy fasta	CAMKMT	chr2	44356947	44777592
CAMKV_chr3_49852989_49874906	1/1	t0001	1493	300	79	65	106	11	37	copy fasta	CAMKV	chr3	49852989	49874906
CAMKV_chr3_49852989_49874906	0/0	t0002	1493	15	9	2	3	0	1	copy fasta	CAMKV	chr3	49852989	49874906
CAMKV_chr3_49852989_49874906	0/0	t0003	1493	6	6	0	0	0	0	copy fasta	CAMKV	chr3	49852989	49874906
CAMKV_chr3_49852989_49874906	0/0	t0004	1493	3	0	0	3	0	0	copy fasta	CAMKV	chr3	49852989	49874906
CAMKV_chr3_49852989_49874906	0/0	t0005	1493	3	0	0	1	2	0	copy fasta	CAMKV	chr3	49852989	49874906
CAMKV_chr3_49852989_49874906	0/0	t0006	1493	2	0	0	0	0	2	copy fasta	CAMKV	chr3	49852989	49874906
CAMKV_chr3_49852989_49874906	0/0	t0007	1493	2	0	2	0	0	0	copy fasta	CAMKV	chr3	49852989	49874906