JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CAMSAP1_chr9_135803487_135912546	0/0	t0032	3210	1	0	1	0	0	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	t0033	3210	1	0	0	1	0	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	t0034	3210	1	0	1	0	0	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	t0035	3210	1	0	0	1	0	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	t0036	3210	1	0	1	0	0	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP2_chr1_200733893_200865704	1/1	t0001	3581	151	27	26	74	9	13	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	t0002	3593	88	14	15	49	1	9	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	t0003	3582	53	5	13	26	2	7	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	t0004	3590	21	6	7	5	2	1	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	t0005	3582	9	8	1	0	0	0	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	t0006	3581	6	6	0	0	0	0	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	t0007	3581	6	0	2	4	0	0	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	t0008	3581	4	2	1	0	0	1	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	t0009	3581	4	2	1	0	0	1	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	t0010	3593	3	3	0	0	0	0	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	t0011	3599	2	0	2	0	0	0	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	t0012	3590	2	2	0	0	0	0	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	t0013	3587	2	2	0	0	0	0	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	t0014	3581	2	2	0	0	0	0	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	t0015	3596	1	1	0	0	0	0	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	t0016	3593	1	1	0	0	0	0	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	t0017	3593	1	0	1	0	0	0	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	t0018	3593	1	0	0	1	0	0	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	t0019	3593	1	0	0	1	0	0	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	t0020	3590	1	0	1	0	0	0	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	t0021	3581	1	0	0	1	0	0	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	t0022	3581	1	0	0	0	0	1	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	t0023	3581	1	1	0	0	0	0	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	t0024	3582	1	0	0	0	0	1	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	t0025	3582	1	0	0	1	0	0	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	t0026	3582	1	0	0	1	0	0	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	t0027	3581	1	0	0	1	0	0	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP3_chr19_7590863_7623304	1/0	t0001	388	257	75	44	113	7	17	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/1	t0002	385	84	3	27	24	6	23	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	t0003	388	10	10	0	0	0	0	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	t0004	373	2	0	1	0	1	0	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	t0005	388	1	0	0	1	0	0	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	t0006	388	1	0	0	1	0	0	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	t0007	388	1	0	0	1	0	0	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	t0008	388	1	1	0	0	0	0	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	t0009	388	1	1	0	0	0	0	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMTA1_chr1_6780454_7774706	0/0	t0001	3292	10	3	0	5	0	2	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	t0002	3291	6	5	1	0	0	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	t0003	3290	5	2	1	2	0	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	t0004	3294	4	4	0	0	0	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	t0005	3292	4	3	1	0	0	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	t0006	3293	2	2	0	0	0	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	t0007	3293	2	0	2	0	0	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	t0008	3293	2	2	0	0	0	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	t0009	3289	2	2	0	0	0	0	copy fasta	CAMTA1	chr1	6780454	7774706