JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CAMTA1_chr1_6780454_7774706	0/0	t0010	3292	2	2	0	0	0	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	t0011	3286	2	1	0	1	0	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	t0012	3292	2	2	0	0	0	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	t0013	3291	2	2	0	0	0	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	t0014	3292	1	1	0	0	0	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	t0015	3290	1	0	0	0	0	1	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	t0016	3286	1	0	0	0	1	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	t0017	3292	1	0	1	0	0	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	t0018	3292	1	0	0	0	1	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	t0019	3293	1	0	0	0	0	1	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	t0020	3293	1	1	0	0	0	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	t0021	3291	1	0	1	0	0	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	t0022	3290	1	1	0	0	0	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	t0023	3292	1	1	0	0	0	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	t0024	3292	1	1	0	0	0	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	t0025	3291	1	0	1	0	0	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	t0026	3292	1	1	0	0	0	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA2_chr17_4962997_4992675	1/1	t0001	907	285	72	45	117	12	37	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	t0002	907	37	3	14	18	1	1	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	t0003	909	33	1	4	24	2	2	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	t0004	907	16	0	1	15	0	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	t0005	907	2	2	0	0	0	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	t0006	907	1	1	0	0	0	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	t0007	907	1	1	0	0	0	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	t0008	907	1	0	0	1	0	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	t0009	907	1	0	0	0	1	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	t0010	907	1	1	0	0	0	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	t0011	907	1	1	0	0	0	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	t0012	907	1	0	0	1	0	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAND1_chr12_67264358_67324953	0/0	t0001	7484	88	12	18	42	6	10	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	1/1	t0002	7484	37	4	9	13	1	8	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0003	7482	37	0	2	28	1	6	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0004	7484	14	0	4	8	0	2	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0005	7481	13	0	1	9	0	3	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0006	7481	10	0	0	10	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0007	7481	9	6	3	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0008	7485	9	0	0	9	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0009	7485	9	1	0	8	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0010	7483	7	0	3	0	3	1	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0011	7481	6	6	0	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0012	7481	6	6	0	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0013	7484	5	5	0	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0014	7483	5	5	0	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0015	7485	4	2	0	2	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0016	7485	3	0	3	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0017	7481	3	3	0	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0018	7480	3	3	0	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0019	7483	3	0	1	1	0	1	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0020	7485	3	3	0	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0021	7483	3	3	0	0	0	0	copy fasta	CAND1	chr12	67264358	67324953