JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CAND1_chr12_67264358_67324953	0/0	t0022	7482	2	2	0	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0023	7482	2	2	0	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0024	7484	2	0	0	2	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0025	7485	2	0	0	1	0	1	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0026	7485	2	0	0	0	0	2	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0027	7483	2	0	1	0	0	1	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0028	7481	2	2	0	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0029	7485	2	2	0	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0030	7483	1	1	0	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0031	7484	1	1	0	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0032	7480	1	1	0	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0033	7481	1	1	0	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0034	7481	1	1	0	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0035	7482	1	1	0	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0036	7482	1	1	0	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0037	7491	1	0	1	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0038	7481	1	1	0	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0039	7481	1	1	0	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0040	7484	1	0	1	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0041	7484	1	0	0	1	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0042	7484	1	0	0	1	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0043	7485	1	0	0	0	1	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0044	7482	1	0	1	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0045	7481	1	1	0	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0046	7480	1	1	0	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0047	7485	1	0	0	1	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0048	7485	1	0	0	1	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0049	7451	1	0	0	0	0	1	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0050	7483	1	0	0	1	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0051	7484	1	0	0	0	0	1	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0052	7484	1	0	0	1	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0053	7484	1	0	1	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0054	7484	1	0	0	1	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0055	7483	1	0	0	1	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0056	7483	1	0	0	1	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0057	7484	1	0	0	1	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0058	7482	1	0	0	0	0	1	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0059	7482	1	0	1	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0060	7482	1	0	0	1	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0061	7514	1	1	0	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0062	7484	1	1	0	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0063	7486	1	1	0	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	t0064	7484	1	1	0	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND2_chr3_12791680_12839803	1/1	t0001	863	303	53	63	145	11	29	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	t0002	863	31	27	4	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	t0003	863	26	3	3	10	2	8	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	t0004	863	9	9	0	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	t0005	863	5	1	1	0	1	2	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	t0006	863	2	1	0	0	0	1	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	t0007	863	1	0	1	0	0	0	copy fasta	CAND2	chr3	12791680	12839803