JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CAND2_chr3_12791680_12839803	0/0	t0008	863	1	0	0	1	0	0	copy fasta	CAND2	chr3	12791680	12839803
CANT1_chr17_78986716_79014764	1/1	t0001	2082	155	36	38	54	10	15	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	t0002	2082	75	8	1	55	3	8	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	t0003	2082	64	8	14	35	0	7	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	t0004	2082	32	13	2	17	0	0	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	t0005	2082	20	6	2	7	2	3	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	t0006	2082	8	3	0	4	0	1	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	t0007	2082	7	0	5	1	1	0	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	t0008	2082	5	0	0	5	0	0	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	t0009	2082	4	0	1	3	0	0	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	t0010	2082	2	0	0	2	0	0	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	t0011	2082	2	1	1	0	0	0	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	t0012	2082	2	0	0	2	0	0	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	t0013	2082	2	2	0	0	0	0	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	t0014	2082	1	0	0	1	0	0	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	t0015	2082	1	1	0	0	0	0	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	t0016	2114	1	0	0	1	0	0	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	t0017	2082	1	1	0	0	0	0	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	t0018	2082	1	0	1	0	0	0	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	t0019	2082	1	0	1	0	0	0	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	t0020	2082	1	1	0	0	0	0	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	t0021	2082	1	1	0	0	0	0	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	t0022	2082	1	0	0	1	0	0	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	t0023	2082	1	1	0	0	0	0	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	t0024	2082	1	0	0	1	0	0	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	t0025	2082	1	1	0	0	0	0	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	t0026	2082	1	1	0	0	0	0	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	t0027	2082	1	1	0	0	0	0	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	t0028	2082	1	0	0	1	0	0	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	t0029	2082	1	1	0	0	0	0	copy fasta	CANT1	chr17	78986716	79014764
CANX_chr5_179693967_179736641	0/0	t0001	3137	93	3	22	50	5	13	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	1/1	t0002	3137	92	26	13	44	2	5	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	t0003	3136	66	13	14	29	6	4	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	t0004	3137	38	1	7	27	0	3	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	t0005	3137	14	7	4	2	0	1	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	t0006	3138	13	12	1	0	0	0	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	t0007	3138	9	9	0	0	0	0	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	t0008	3137	7	4	0	3	0	0	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	t0009	3137	5	5	0	0	0	0	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	t0010	3137	4	0	0	4	0	0	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	t0011	3136	3	0	1	1	1	0	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	t0012	3136	3	2	1	0	0	0	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	t0013	3136	3	0	1	0	1	1	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	t0014	3137	3	0	1	0	0	2	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	t0015	3136	2	2	0	0	0	0	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	t0016	3138	2	0	0	2	0	0	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	t0017	3138	2	2	0	0	0	0	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	t0018	3137	2	0	0	2	0	0	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	t0019	3136	2	0	0	1	0	1	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	t0020	3135	1	0	0	1	0	0	copy fasta	CANX	chr5	179693967	179736641