JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CANX_chr5_179693967_179736641	0/0	t0021	3136	1	1	0	0	0	0	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	t0022	3138	1	1	0	0	0	0	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	t0023	3136	1	0	0	1	0	0	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	t0024	3136	1	0	0	1	0	0	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	t0025	3137	1	0	0	0	0	1	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	t0026	3137	1	0	0	0	0	1	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	t0027	3137	1	1	0	0	0	0	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	t0028	3137	1	0	0	1	0	0	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	t0029	3136	1	0	0	0	1	0	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	t0030	3138	1	1	0	0	0	0	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	t0031	3137	1	0	0	1	0	0	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	t0032	3137	1	1	0	0	0	0	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	t0033	3137	1	0	1	0	0	0	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	t0034	3137	1	0	0	1	0	0	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	t0035	3136	1	1	0	0	0	0	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	t0036	3138	1	0	0	1	0	0	copy fasta	CANX	chr5	179693967	179736641
CAP1_chr1_40035729_40077648	0/1	t0001	1200	126	29	17	54	6	19	copy fasta	CAP1	chr1	40035729	40077648
CAP1_chr1_40035729_40077648	0/0	t0002	1201	68	10	5	40	3	10	copy fasta	CAP1	chr1	40035729	40077648
CAP1_chr1_40035729_40077648	0/0	t0003	1200	63	9	4	42	1	7	copy fasta	CAP1	chr1	40035729	40077648
CAP1_chr1_40035729_40077648	1/0	t0004	1199	59	21	14	16	3	4	copy fasta	CAP1	chr1	40035729	40077648
CAP1_chr1_40035729_40077648	0/0	t0005	1201	12	12	0	0	0	0	copy fasta	CAP1	chr1	40035729	40077648
CAP1_chr1_40035729_40077648	0/0	t0006	1200	11	0	1	9	0	1	copy fasta	CAP1	chr1	40035729	40077648
CAP1_chr1_40035729_40077648	0/0	t0007	1198	5	0	2	0	3	0	copy fasta	CAP1	chr1	40035729	40077648
CAP1_chr1_40035729_40077648	0/0	t0008	1200	4	0	0	4	0	0	copy fasta	CAP1	chr1	40035729	40077648
CAP1_chr1_40035729_40077648	0/0	t0009	1200	4	1	1	2	0	0	copy fasta	CAP1	chr1	40035729	40077648
CAP1_chr1_40035729_40077648	0/0	t0010	1201	4	4	0	0	0	0	copy fasta	CAP1	chr1	40035729	40077648
CAP1_chr1_40035729_40077648	0/0	t0011	1201	4	2	2	0	0	0	copy fasta	CAP1	chr1	40035729	40077648
CAP1_chr1_40035729_40077648	0/0	t0012	1201	3	1	0	1	0	1	copy fasta	CAP1	chr1	40035729	40077648
CAP1_chr1_40035729_40077648	0/0	t0013	1199	3	3	0	0	0	0	copy fasta	CAP1	chr1	40035729	40077648
CAP1_chr1_40035729_40077648	0/0	t0014	1200	2	2	0	0	0	0	copy fasta	CAP1	chr1	40035729	40077648
CAP1_chr1_40035729_40077648	0/0	t0015	1199	2	2	0	0	0	0	copy fasta	CAP1	chr1	40035729	40077648
CAP1_chr1_40035729_40077648	0/0	t0016	1201	1	0	0	1	0	0	copy fasta	CAP1	chr1	40035729	40077648
CAP1_chr1_40035729_40077648	0/0	t0017	1200	1	0	0	1	0	0	copy fasta	CAP1	chr1	40035729	40077648
CAP1_chr1_40035729_40077648	0/0	t0018	1201	1	0	0	1	0	0	copy fasta	CAP1	chr1	40035729	40077648
CAP1_chr1_40035729_40077648	0/0	t0019	1200	1	0	0	1	0	0	copy fasta	CAP1	chr1	40035729	40077648
CAP1_chr1_40035729_40077648	0/0	t0020	1200	1	0	0	1	0	0	copy fasta	CAP1	chr1	40035729	40077648
CAP1_chr1_40035729_40077648	0/0	t0021	1200	1	1	0	0	0	0	copy fasta	CAP1	chr1	40035729	40077648
CAP1_chr1_40035729_40077648	0/0	t0022	1201	1	0	0	1	0	0	copy fasta	CAP1	chr1	40035729	40077648
CAP1_chr1_40035729_40077648	0/0	t0023	1199	1	1	0	0	0	0	copy fasta	CAP1	chr1	40035729	40077648
CAP2_chr6_17388595_17562780	0/1	t0001	1492	133	50	25	30	6	21	copy fasta	CAP2	chr6	17388595	17562780
CAP2_chr6_17388595_17562780	1/0	t0002	1491	67	15	18	24	2	7	copy fasta	CAP2	chr6	17388595	17562780
CAP2_chr6_17388595_17562780	0/0	t0003	1492	1	0	0	1	0	0	copy fasta	CAP2	chr6	17388595	17562780
CAP2_chr6_17388595_17562780	0/0	t0004	1492	1	0	0	1	0	0	copy fasta	CAP2	chr6	17388595	17562780
CAP2_chr6_17388595_17562780	0/0	t0005	1492	1	1	0	0	0	0	copy fasta	CAP2	chr6	17388595	17562780
CAP2_chr6_17388595_17562780	0/0	t0006	1492	1	1	0	0	0	0	copy fasta	CAP2	chr6	17388595	17562780
CAP2_chr6_17388595_17562780	0/0	t0007	1492	1	1	0	0	0	0	copy fasta	CAP2	chr6	17388595	17562780
CAP2_chr6_17388595_17562780	0/0	t0008	1492	1	0	1	0	0	0	copy fasta	CAP2	chr6	17388595	17562780
CAPG_chr2_85389753_85415366	1/1	t0001	204	408	86	76	178	18	48	copy fasta	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	t0002	204	2	2	0	0	0	0	copy fasta	CAPG	chr2	85389753	85415366
CAPN10_chr2_240581734_240604104	0/1	t0001	603	225	57	39	89	12	27	copy fasta	CAPN10	chr2	240581734	240604104