JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CAPN14_chr2_31168056_31222515	1/0	t0003	1738	43	6	7	25	2	2	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/1	t0004	1738	22	7	9	0	4	1	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	t0005	1738	17	10	3	3	0	1	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	t0006	1738	12	3	3	2	2	2	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	t0007	1738	9	1	6	0	0	2	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	t0008	1738	9	1	1	4	1	2	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	t0009	1738	7	7	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	t0010	1738	6	6	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	t0011	1738	5	5	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	t0012	1738	4	4	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	t0013	1738	4	4	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	t0014	1738	3	1	1	1	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	t0015	1738	3	3	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	t0016	1738	2	1	1	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	t0017	1738	2	0	0	2	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	t0018	1738	2	2	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	t0019	1738	2	0	0	0	0	2	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	t0020	1738	2	0	1	1	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	t0021	1738	1	0	1	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	t0022	1738	1	1	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	t0023	1738	1	1	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	t0024	1738	1	0	0	0	0	1	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	t0025	1738	1	0	0	1	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	t0026	1738	1	0	0	0	0	1	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	t0027	1738	1	1	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	t0028	1738	1	0	1	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	t0029	1738	1	1	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	t0030	1738	1	1	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	t0031	1738	1	0	1	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	t0032	1738	1	0	0	1	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN15_chr16_522712_559636	1/1	t0001	1628	165	39	52	40	10	22	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	t0002	1628	145	12	14	104	3	12	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	t0003	1628	37	13	7	14	2	1	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	t0004	1628	8	8	0	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	t0005	1629	4	0	1	3	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	t0006	1628	4	4	0	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	t0007	1628	4	1	0	0	0	3	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	t0008	1628	4	4	0	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	t0009	1628	3	3	0	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	t0010	1628	3	3	0	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	t0011	1629	2	0	1	1	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	t0012	1628	2	2	0	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	t0013	1629	2	0	1	1	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	t0014	1628	2	0	2	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	t0015	1628	2	0	0	2	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	t0016	1628	2	2	0	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	t0017	1629	1	1	0	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	t0018	1630	1	0	0	0	0	1	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	t0019	1629	1	0	0	1	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	t0020	1628	1	0	0	1	0	0	copy fasta	CAPN15	chr16	522712	559636