JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CAPN15_chr16_522712_559636	0/0	t0021	1628	1	1	0	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	t0022	1628	1	0	0	1	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	t0023	1628	1	0	1	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	t0024	1629	1	0	0	0	0	1	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	t0025	1628	1	0	0	0	0	1	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	t0026	1628	1	0	1	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	t0027	1628	1	1	0	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	t0028	1628	1	0	0	1	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	t0029	1628	1	0	0	1	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	t0030	1628	1	1	0	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	t0031	1628	1	1	0	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	t0032	1628	1	0	0	0	0	1	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	t0033	1628	1	1	0	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	t0034	1628	1	0	0	0	1	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	t0035	1628	1	0	1	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	t0036	1628	1	0	1	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	t0037	1628	1	1	0	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN1_chr11_65176928_65217006	1/1	t0001	807	384	85	64	175	14	44	copy fasta	CAPN1	chr11	65176928	65217006
CAPN1_chr11_65176928_65217006	0/0	t0002	807	5	5	0	0	0	0	copy fasta	CAPN1	chr11	65176928	65217006
CAPN1_chr11_65176928_65217006	0/0	t0003	807	1	1	0	0	0	0	copy fasta	CAPN1	chr11	65176928	65217006
CAPN1_chr11_65176928_65217006	0/0	t0004	807	1	1	0	0	0	0	copy fasta	CAPN1	chr11	65176928	65217006
CAPN1_chr11_65176928_65217006	0/0	t0005	807	1	1	0	0	0	0	copy fasta	CAPN1	chr11	65176928	65217006
CAPN1_chr11_65176928_65217006	0/0	t0006	807	1	1	0	0	0	0	copy fasta	CAPN1	chr11	65176928	65217006
CAPN1_chr11_65176928_65217006	0/0	t0007	807	1	0	0	1	0	0	copy fasta	CAPN1	chr11	65176928	65217006
CAPN2_chr1_223707539_223781018	0/0	t0001	1264	149	38	37	62	4	8	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	1/1	t0002	1264	131	10	20	70	5	24	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	t0003	1264	37	28	3	3	1	2	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	t0004	1264	17	0	0	17	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	t0005	1263	16	1	6	7	2	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	t0006	1264	12	10	2	0	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	t0007	1264	4	4	0	0	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	t0008	1264	3	0	0	3	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	t0009	1267	3	0	0	3	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	t0010	1264	2	2	0	0	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	t0011	1264	2	2	0	0	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	t0012	1264	1	0	0	1	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	t0013	1264	1	1	0	0	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN3_chr15_42354501_42417317	0/1	t0001	850	296	89	54	110	9	33	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	1/0	t0002	850	3	0	0	0	1	1	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	t0003	850	3	3	0	0	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	t0004	850	1	0	0	1	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	t0005	850	1	0	0	1	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	t0006	850	1	1	0	0	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	t0007	850	1	1	0	0	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN5_chr11_77061971_77131155	1/1	t0001	2445	96	12	23	38	3	18	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0002	2437	59	8	6	38	1	6	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0003	2445	47	5	8	28	0	6	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0004	2445	18	0	4	11	0	3	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0005	2445	15	4	6	0	4	1	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0006	2437	13	10	0	3	0	0	copy fasta	CAPN5	chr11	77061971	77131155