JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CAPN5_chr11_77061971_77131155	0/0	t0007	2447	13	8	3	0	0	2	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0008	2447	10	0	0	10	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0009	2449	10	0	2	8	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0010	2449	8	0	1	6	0	1	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0011	2447	8	4	4	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0012	2449	6	6	0	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0013	2445	6	0	5	0	0	1	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0014	2447	5	5	0	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0015	2441	4	4	0	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0016	2443	4	2	0	1	0	1	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0017	2439	3	3	0	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0018	2447	3	0	0	2	0	1	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0019	2445	3	2	1	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0020	2453	3	3	0	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0021	2457	3	3	0	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0022	2447	2	2	0	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0023	2445	2	0	0	1	0	1	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0024	2449	2	0	0	2	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0025	2453	2	0	1	1	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0026	2445	2	0	0	0	2	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0027	2451	2	0	0	2	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0028	2445	2	1	0	1	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0029	2437	2	2	0	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0030	2437	1	0	0	1	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0031	2445	1	1	0	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0032	2445	1	0	0	1	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0033	2437	1	1	0	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0034	2445	1	0	1	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0035	2445	1	0	1	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0036	2451	1	0	1	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0037	2445	1	0	1	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0038	2443	1	0	0	0	0	1	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0039	2473	1	0	1	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0040	2453	1	0	0	1	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0041	2455	1	0	1	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0042	2455	1	0	0	1	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0043	2461	1	1	0	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0044	2463	1	1	0	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0045	2443	1	1	0	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0046	2449	1	1	0	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0047	2447	1	0	0	0	1	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0048	2437	1	1	0	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0049	2447	1	0	0	0	1	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0050	2439	1	1	0	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0051	2447	1	1	0	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0052	2441	1	1	0	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0053	2445	1	0	0	1	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0054	2445	1	0	0	1	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0055	2447	1	0	1	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0056	2449	1	0	1	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155