JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CAPN5_chr11_77061971_77131155	0/0	t0057	2449	1	0	1	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	t0058	2453	1	0	1	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN6_chrX_111240099_111275483	0/1	t0001	1607	173	29	34	85	6	18	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	t0002	1604	12	11	1	0	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	t0003	1631	11	11	0	0	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	t0004	1607	7	0	0	7	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	t0005	1634	5	4	1	0	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	t0006	1631	3	2	1	0	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	t0007	1616	3	3	0	0	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	1/0	t0008	1607	3	0	0	0	1	1	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	t0009	1631	2	2	0	0	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	t0010	1628	2	2	0	0	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	t0011	1619	2	2	0	0	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	t0012	1613	2	2	0	0	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	t0013	1610	2	1	0	1	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	t0014	1607	2	0	0	2	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	t0015	1605	1	1	0	0	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	t0016	1658	1	1	0	0	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	t0017	1655	1	1	0	0	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	t0018	1640	1	1	0	0	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	t0019	1628	1	1	0	0	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	t0020	1628	1	1	0	0	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	t0021	1622	1	1	0	0	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	t0022	1622	1	1	0	0	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	t0023	1619	1	1	0	0	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	t0024	1607	1	1	0	0	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	t0025	1607	1	0	0	0	0	1	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	t0026	1607	1	0	0	1	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	t0027	1607	1	1	0	0	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN7_chr3_15201246_15257916	0/1	t0001	1907	231	37	43	113	7	30	copy fasta	CAPN7	chr3	15201246	15257916
CAPN7_chr3_15201246_15257916	1/0	t0002	1907	80	2	11	54	5	7	copy fasta	CAPN7	chr3	15201246	15257916
CAPN7_chr3_15201246_15257916	0/0	t0003	2224	14	13	1	0	0	0	copy fasta	CAPN7	chr3	15201246	15257916
CAPN7_chr3_15201246_15257916	0/0	t0004	2225	10	10	0	0	0	0	copy fasta	CAPN7	chr3	15201246	15257916
CAPN7_chr3_15201246_15257916	0/0	t0005	2225	7	7	0	0	0	0	copy fasta	CAPN7	chr3	15201246	15257916
CAPN7_chr3_15201246_15257916	0/0	t0006	2225	6	6	0	0	0	0	copy fasta	CAPN7	chr3	15201246	15257916
CAPN7_chr3_15201246_15257916	0/0	t0007	1907	6	0	5	0	0	1	copy fasta	CAPN7	chr3	15201246	15257916
CAPN7_chr3_15201246_15257916	0/0	t0008	1907	4	4	0	0	0	0	copy fasta	CAPN7	chr3	15201246	15257916
CAPN7_chr3_15201246_15257916	0/0	t0009	2226	3	3	0	0	0	0	copy fasta	CAPN7	chr3	15201246	15257916
CAPN7_chr3_15201246_15257916	0/0	t0010	2226	2	2	0	0	0	0	copy fasta	CAPN7	chr3	15201246	15257916
CAPN7_chr3_15201246_15257916	0/0	t0011	1907	2	2	0	0	0	0	copy fasta	CAPN7	chr3	15201246	15257916
CAPN7_chr3_15201246_15257916	0/0	t0012	2225	2	2	0	0	0	0	copy fasta	CAPN7	chr3	15201246	15257916
CAPN7_chr3_15201246_15257916	0/0	t0013	1890	1	0	0	1	0	0	copy fasta	CAPN7	chr3	15201246	15257916
CAPN7_chr3_15201246_15257916	0/0	t0014	2226	1	1	0	0	0	0	copy fasta	CAPN7	chr3	15201246	15257916
CAPN7_chr3_15201246_15257916	0/0	t0015	1907	1	1	0	0	0	0	copy fasta	CAPN7	chr3	15201246	15257916
CAPN7_chr3_15201246_15257916	0/0	t0016	1907	1	0	0	1	0	0	copy fasta	CAPN7	chr3	15201246	15257916
CAPN7_chr3_15201246_15257916	0/0	t0017	2225	1	1	0	0	0	0	copy fasta	CAPN7	chr3	15201246	15257916
CAPN7_chr3_15201246_15257916	0/0	t0018	2226	1	1	0	0	0	0	copy fasta	CAPN7	chr3	15201246	15257916
CAPN7_chr3_15201246_15257916	0/0	t0019	2224	1	1	0	0	0	0	copy fasta	CAPN7	chr3	15201246	15257916
CAPN7_chr3_15201246_15257916	0/0	t0020	2223	1	1	0	0	0	0	copy fasta	CAPN7	chr3	15201246	15257916
CAPN7_chr3_15201246_15257916	0/0	t0021	1907	1	0	0	1	0	0	copy fasta	CAPN7	chr3	15201246	15257916