JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CAPN9_chr1_230742388_230806989	1/1	t0001	503	381	83	69	169	12	46	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	t0002	503	7	6	1	0	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	t0003	503	2	1	0	1	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	t0004	503	2	0	1	1	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	t0005	503	1	0	0	1	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	t0006	503	1	0	1	0	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPNS1_chr19_36135066_36155353	0/1	t0001	622	442	77	72	231	17	44	copy fasta	CAPNS1	chr19	36135066	36155353
CAPNS1_chr19_36135066_36155353	1/0	t0002	622	10	0	4	0	0	5	copy fasta	CAPNS1	chr19	36135066	36155353
CAPNS1_chr19_36135066_36155353	0/0	t0003	622	9	9	0	0	0	0	copy fasta	CAPNS1	chr19	36135066	36155353
CAPNS1_chr19_36135066_36155353	0/0	t0004	622	9	9	0	0	0	0	copy fasta	CAPNS1	chr19	36135066	36155353
CAPNS1_chr19_36135066_36155353	0/0	t0005	622	6	0	4	0	1	1	copy fasta	CAPNS1	chr19	36135066	36155353
CAPNS1_chr19_36135066_36155353	0/0	t0006	622	2	1	1	0	0	0	copy fasta	CAPNS1	chr19	36135066	36155353
CAPNS1_chr19_36135066_36155353	0/0	t0007	622	1	0	0	1	0	0	copy fasta	CAPNS1	chr19	36135066	36155353
CAPNS1_chr19_36135066_36155353	0/0	t0008	622	1	0	1	0	0	0	copy fasta	CAPNS1	chr19	36135066	36155353
CAPNS2_chr16_55561684_55572687	1/1	t0001	258	412	88	66	200	14	42	copy fasta	CAPNS2	chr16	55561684	55572687
CAPRIN1_chr11_34046731_34107610	0/1	t0001	3385	176	43	38	64	6	24	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN1_chr11_34046731_34107610	0/0	t0002	3389	18	13	2	0	0	3	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN1_chr11_34046731_34107610	0/0	t0003	3389	9	9	0	0	0	0	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN1_chr11_34046731_34107610	0/0	t0004	3385	5	5	0	0	0	0	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN1_chr11_34046731_34107610	0/0	t0005	3382	4	4	0	0	0	0	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN1_chr11_34046731_34107610	0/0	t0006	3385	3	3	0	0	0	0	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN1_chr11_34046731_34107610	0/0	t0007	3385	3	3	0	0	0	0	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN1_chr11_34046731_34107610	0/0	t0008	3385	2	0	2	0	0	0	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN1_chr11_34046731_34107610	0/0	t0009	3385	2	2	0	0	0	0	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN1_chr11_34046731_34107610	0/0	t0010	3386	2	2	0	0	0	0	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN1_chr11_34046731_34107610	1/0	t0011	3385	1	0	0	0	0	0	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN1_chr11_34046731_34107610	0/0	t0012	3385	1	1	0	0	0	0	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN1_chr11_34046731_34107610	0/0	t0013	3385	1	0	1	0	0	0	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN1_chr11_34046731_34107610	0/0	t0014	3385	1	1	0	0	0	0	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN1_chr11_34046731_34107610	0/0	t0015	3385	1	0	1	0	0	0	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN1_chr11_34046731_34107610	0/0	t0016	3385	1	0	0	1	0	0	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN1_chr11_34046731_34107610	0/0	t0017	3385	1	0	0	0	0	1	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN1_chr11_34046731_34107610	0/0	t0018	3385	1	1	0	0	0	0	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN1_chr11_34046731_34107610	0/0	t0019	3385	1	0	0	0	0	1	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN1_chr11_34046731_34107610	0/0	t0020	3385	1	0	1	0	0	0	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN1_chr11_34046731_34107610	0/0	t0021	3385	1	0	0	1	0	0	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN1_chr11_34046731_34107610	0/0	t0022	3385	1	0	0	1	0	0	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN1_chr11_34046731_34107610	0/0	t0023	3385	1	1	0	0	0	0	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN1_chr11_34046731_34107610	0/0	t0024	3385	1	0	0	1	0	0	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN1_chr11_34046731_34107610	0/0	t0025	3385	1	0	1	0	0	0	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN1_chr11_34046731_34107610	0/0	t0026	3385	1	0	1	0	0	0	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN1_chr11_34046731_34107610	0/0	t0027	3385	1	0	0	1	0	0	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN1_chr11_34046731_34107610	0/0	t0028	3385	1	0	0	0	0	1	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN1_chr11_34046731_34107610	0/0	t0029	3385	1	1	0	0	0	0	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN1_chr11_34046731_34107610	0/0	t0030	3385	1	0	1	0	0	0	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN1_chr11_34046731_34107610	0/0	t0031	3385	1	0	0	1	0	0	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN1_chr11_34046731_34107610	0/0	t0032	3385	1	1	0	0	0	0	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN2_chr12_30704553_30759951	1/0	t0001	590	331	73	47	173	7	30	copy fasta	CAPRIN2	chr12	30704553	30759951
CAPRIN2_chr12_30704553_30759951	0/1	t0002	590	38	17	9	1	0	10	copy fasta	CAPRIN2	chr12	30704553	30759951
CAPRIN2_chr12_30704553_30759951	0/0	t0003	590	7	0	6	0	1	0	copy fasta	CAPRIN2	chr12	30704553	30759951