JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CAPRIN2_chr12_30704553_30759951	0/0	t0004	590	2	2	0	0	0	0	copy fasta	CAPRIN2	chr12	30704553	30759951
CAPS2_chr12_75270979_75335324	0/0	t0001	3398	172	28	40	83	10	11	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	t0002	3398	76	13	4	39	0	20	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	1/0	t0003	3399	26	0	17	1	3	4	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	t0004	3398	19	13	1	0	2	3	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	t0005	3397	16	0	1	14	0	1	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	t0006	3398	10	0	0	9	0	1	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	t0007	3398	7	7	0	0	0	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	t0008	3398	5	5	0	0	0	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/1	t0009	3399	4	0	2	0	1	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	t0010	3397	4	4	0	0	0	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	t0011	3398	4	0	2	0	0	2	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	t0012	3398	2	1	1	0	0	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	t0013	3398	2	2	0	0	0	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	t0014	3398	2	2	0	0	0	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	t0015	3398	2	2	0	0	0	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	t0016	3395	2	1	1	0	0	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	t0017	3398	1	0	0	1	0	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	t0018	3398	1	0	0	1	0	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	t0019	3398	1	0	0	1	0	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	t0020	3399	1	0	1	0	0	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	t0021	3399	1	0	0	0	0	1	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	t0022	3398	1	1	0	0	0	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	t0023	3398	1	0	0	1	0	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	t0024	3398	1	0	0	1	0	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	t0025	3397	1	0	0	0	0	1	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	t0026	3398	1	1	0	0	0	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	t0027	3398	1	1	0	0	0	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	t0028	3398	1	0	0	1	0	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	t0029	3398	1	1	0	0	0	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	t0030	3398	1	0	0	1	0	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	t0031	3395	1	0	0	1	0	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	t0032	3395	1	0	0	1	0	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	t0033	3395	1	0	0	1	0	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPSL_chr5_35899288_35943622	1/0	t0001	340	306	44	50	164	12	35	copy fasta	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/1	t0002	340	72	26	17	13	6	9	copy fasta	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	t0003	340	18	16	2	0	0	0	copy fasta	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	t0004	340	4	3	1	0	0	0	copy fasta	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	t0005	340	1	0	0	1	0	0	copy fasta	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	t0006	340	1	1	0	0	0	0	copy fasta	CAPSL	chr5	35899288	35943622
CAPS_chr19_5909254_5921211	0/1	t0001	968	276	63	54	113	10	35	copy fasta	CAPS	chr19	5909254	5921211
CAPS_chr19_5909254_5921211	0/0	t0002	968	43	9	8	23	1	2	copy fasta	CAPS	chr19	5909254	5921211
CAPS_chr19_5909254_5921211	1/0	t0003	968	41	2	6	22	1	9	copy fasta	CAPS	chr19	5909254	5921211
CAPS_chr19_5909254_5921211	0/0	t0004	968	9	0	0	9	0	0	copy fasta	CAPS	chr19	5909254	5921211
CAPS_chr19_5909254_5921211	0/0	t0005	968	5	5	0	0	0	0	copy fasta	CAPS	chr19	5909254	5921211
CAPS_chr19_5909254_5921211	0/0	t0006	968	5	5	0	0	0	0	copy fasta	CAPS	chr19	5909254	5921211
CAPS_chr19_5909254_5921211	0/0	t0007	968	5	3	2	0	0	0	copy fasta	CAPS	chr19	5909254	5921211
CAPS_chr19_5909254_5921211	0/0	t0008	968	3	1	0	0	0	2	copy fasta	CAPS	chr19	5909254	5921211
CAPS_chr19_5909254_5921211	0/0	t0009	968	1	0	0	1	0	0	copy fasta	CAPS	chr19	5909254	5921211
CAPS_chr19_5909254_5921211	0/0	t0010	968	1	1	0	0	0	0	copy fasta	CAPS	chr19	5909254	5921211