JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CAPS_chr19_5909254_5921211	0/0	t0011	968	1	0	0	1	0	0	copy fasta	CAPS	chr19	5909254	5921211
CAPS_chr19_5909254_5921211	0/0	t0012	968	1	1	0	0	0	0	copy fasta	CAPS	chr19	5909254	5921211
CAPS_chr19_5909254_5921211	0/0	t0013	968	1	0	0	1	0	0	copy fasta	CAPS	chr19	5909254	5921211
CAPS_chr19_5909254_5921211	0/0	t0014	968	1	1	0	0	0	0	copy fasta	CAPS	chr19	5909254	5921211
CAPS_chr19_5909254_5921211	0/0	t0015	968	1	1	0	0	0	0	copy fasta	CAPS	chr19	5909254	5921211
CAPS_chr19_5909254_5921211	0/0	t0016	968	1	1	0	0	0	0	copy fasta	CAPS	chr19	5909254	5921211
CAPS_chr19_5909254_5921211	0/0	t0017	968	1	1	0	0	0	0	copy fasta	CAPS	chr19	5909254	5921211
CAPZA1_chr1_112614832_112676616	0/1	t0001	1501	95	25	17	44	3	5	copy fasta	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	t0002	1500	86	25	24	28	5	4	copy fasta	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	t0003	1499	74	11	12	47	0	4	copy fasta	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	1/0	t0004	1498	37	8	9	11	5	3	copy fasta	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	t0005	1498	34	6	1	25	0	2	copy fasta	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	t0006	1502	13	1	3	5	3	1	copy fasta	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	t0007	1498	6	1	3	1	0	1	copy fasta	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	t0008	1499	6	0	2	4	0	0	copy fasta	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	t0009	1489	6	6	0	0	0	0	copy fasta	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	t0010	1499	5	0	0	5	0	0	copy fasta	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	t0011	1498	2	0	0	2	0	0	copy fasta	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	t0012	1499	2	0	1	1	0	0	copy fasta	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	t0013	1500	1	0	0	1	0	0	copy fasta	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	t0014	1500	1	1	0	0	0	0	copy fasta	CAPZA1	chr1	112614832	112676616
CAPZA2_chr7_116857587_116927049	1/1	t0001	4208	87	32	15	28	4	6	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0002	4208	85	4	19	47	3	12	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0003	4203	68	12	13	37	2	4	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0004	4209	26	1	5	14	0	6	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0005	4210	16	16	0	0	0	0	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0006	4200	9	1	0	5	1	2	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0007	4164	6	6	0	0	0	0	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0008	4203	5	0	0	5	0	0	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0009	4208	4	0	3	0	1	0	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0010	4212	4	0	2	2	0	0	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0011	4208	3	3	0	0	0	0	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0012	4205	3	0	0	3	0	0	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0013	4208	3	0	0	3	0	0	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0014	4208	2	2	0	0	0	0	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0015	4208	2	2	0	0	0	0	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0016	4203	2	2	0	0	0	0	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0017	4202	2	0	0	2	0	0	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0018	4208	1	0	0	1	0	0	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0019	4208	1	0	0	1	0	0	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0020	4208	1	0	0	0	0	1	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0021	4208	1	0	0	0	1	0	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0022	4208	1	0	1	0	0	0	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0023	4208	1	0	0	0	0	1	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0024	4208	1	0	0	1	0	0	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0025	4208	1	0	0	1	0	0	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0026	4208	1	0	0	0	0	1	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0027	4208	1	0	0	1	0	0	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0028	4208	1	0	0	1	0	0	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0029	4208	1	1	0	0	0	0	copy fasta	CAPZA2	chr7	116857587	116927049