JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CAPZA2_chr7_116857587_116927049	0/0	t0030	4209	1	1	0	0	0	0	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0031	4210	1	1	0	0	0	0	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0032	4202	1	1	0	0	0	0	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0033	4209	1	0	1	0	0	0	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0034	4208	1	1	0	0	0	0	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0035	4208	1	1	0	0	0	0	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0036	4208	1	1	0	0	0	0	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0037	4208	1	1	0	0	0	0	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0038	4208	1	1	0	0	0	0	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0039	4208	1	0	0	0	0	1	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0040	4200	1	0	0	1	0	0	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0041	4203	1	0	0	0	0	1	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0042	4202	1	0	0	1	0	0	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0043	4203	1	0	1	0	0	0	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	t0044	4201	1	0	0	0	0	1	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA3_chr12_18733119_18744188	1/1	t0001	171	218	38	42	105	9	22	copy fasta	CAPZA3	chr12	18733119	18744188
CAPZA3_chr12_18733119_18744188	0/0	t0002	171	170	54	22	69	9	16	copy fasta	CAPZA3	chr12	18733119	18744188
CAPZA3_chr12_18733119_18744188	0/0	t0003	171	4	4	0	0	0	0	copy fasta	CAPZA3	chr12	18733119	18744188
CAPZB_chr1_19333775_19490539	1/1	t0001	857	244	66	45	97	8	26	copy fasta	CAPZB	chr1	19333775	19490539
CAPZB_chr1_19333775_19490539	0/0	t0002	857	50	8	7	30	2	3	copy fasta	CAPZB	chr1	19333775	19490539
CAPZB_chr1_19333775_19490539	0/0	t0003	856	32	1	3	21	3	4	copy fasta	CAPZB	chr1	19333775	19490539
CAPZB_chr1_19333775_19490539	0/0	t0004	858	15	0	3	10	0	2	copy fasta	CAPZB	chr1	19333775	19490539
CAPZB_chr1_19333775_19490539	0/0	t0005	857	3	0	1	0	2	0	copy fasta	CAPZB	chr1	19333775	19490539
CAPZB_chr1_19333775_19490539	0/0	t0006	857	3	1	2	0	0	0	copy fasta	CAPZB	chr1	19333775	19490539
CAPZB_chr1_19333775_19490539	0/0	t0007	855	3	3	0	0	0	0	copy fasta	CAPZB	chr1	19333775	19490539
CAPZB_chr1_19333775_19490539	0/0	t0008	857	2	0	1	0	1	0	copy fasta	CAPZB	chr1	19333775	19490539
CAPZB_chr1_19333775_19490539	0/0	t0009	857	2	2	0	0	0	0	copy fasta	CAPZB	chr1	19333775	19490539
CAPZB_chr1_19333775_19490539	0/0	t0010	859	1	1	0	0	0	0	copy fasta	CAPZB	chr1	19333775	19490539
CAPZB_chr1_19333775_19490539	0/0	t0011	859	1	1	0	0	0	0	copy fasta	CAPZB	chr1	19333775	19490539
CAPZB_chr1_19333775_19490539	0/0	t0012	857	1	0	0	1	0	0	copy fasta	CAPZB	chr1	19333775	19490539
CAPZB_chr1_19333775_19490539	0/0	t0013	859	1	1	0	0	0	0	copy fasta	CAPZB	chr1	19333775	19490539
CAPZB_chr1_19333775_19490539	0/0	t0014	857	1	1	0	0	0	0	copy fasta	CAPZB	chr1	19333775	19490539
CAPZB_chr1_19333775_19490539	0/0	t0015	856	1	0	0	0	0	1	copy fasta	CAPZB	chr1	19333775	19490539
CAPZB_chr1_19333775_19490539	0/0	t0016	857	1	1	0	0	0	0	copy fasta	CAPZB	chr1	19333775	19490539
CAPZB_chr1_19333775_19490539	0/0	t0017	857	1	0	0	1	0	0	copy fasta	CAPZB	chr1	19333775	19490539
CAPZB_chr1_19333775_19490539	0/0	t0018	869	1	1	0	0	0	0	copy fasta	CAPZB	chr1	19333775	19490539
CAPZB_chr1_19333775_19490539	0/0	t0019	857	1	1	0	0	0	0	copy fasta	CAPZB	chr1	19333775	19490539
CARD10_chr22_37485362_37524415	1/0	t0001	1013	200	72	30	59	9	29	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/1	t0002	1013	51	5	7	34	1	3	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	t0003	1013	4	0	3	1	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	t0004	1013	3	0	3	0	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	t0005	1013	3	0	0	3	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	t0006	1013	3	3	0	0	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	t0007	1013	2	0	0	2	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	t0008	1013	2	1	1	0	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	t0009	1013	2	0	0	2	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	t0010	1013	2	2	0	0	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	t0011	1013	1	0	0	1	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	t0012	992	1	0	0	1	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	t0013	1013	1	0	0	1	0	0	copy fasta	CARD10	chr22	37485362	37524415