JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CARD10_chr22_37485362_37524415	0/0	t0014	1013	1	1	0	0	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD11_chr7_2901142_3048867	1/1	t0001	823	278	74	62	94	14	32	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	t0002	823	27	10	1	11	2	3	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	t0003	823	3	3	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	t0004	823	3	3	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	t0005	823	1	1	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	t0006	823	1	1	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	t0007	823	1	0	1	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	t0008	823	1	0	0	1	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	t0009	823	1	0	0	0	1	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	t0010	823	1	0	1	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	t0011	823	1	1	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	t0012	823	1	0	1	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	t0013	823	1	1	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	t0014	823	1	0	0	0	1	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	t0015	823	1	0	0	0	0	1	copy fasta	CARD11	chr7	2901142	3048867
CARD14_chr17_80165030_80214331	0/1	t0001	1703	163	15	26	89	13	19	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	1/0	t0002	1703	131	30	35	50	2	13	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	t0003	1703	12	12	0	0	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	t0004	1703	11	6	0	1	0	4	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	t0005	1703	9	4	1	0	2	2	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	t0006	1703	8	0	2	3	0	3	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	t0007	1703	8	5	3	0	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	t0008	1703	5	1	2	0	1	1	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	t0009	1703	4	4	0	0	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	t0010	1703	3	0	0	3	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	t0011	1703	3	2	1	0	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	t0012	1703	3	3	0	0	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	t0013	1703	3	3	0	0	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	t0014	1703	1	0	0	1	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	t0015	1703	1	1	0	0	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	t0016	1703	1	1	0	0	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	t0017	1703	1	1	0	0	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	t0018	1703	1	0	1	0	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	t0019	1703	1	1	0	0	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	t0020	1631	1	0	0	1	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	t0021	1703	1	1	0	0	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	t0022	1703	1	1	0	0	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	t0023	1703	1	1	0	0	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	t0024	1703	1	0	1	0	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	t0025	1703	1	1	0	0	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	t0026	1703	1	1	0	0	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD16_chr11_105036563_105050335	1/1	t0001	239	451	95	82	212	16	44	copy fasta	CARD16	chr11	105036563	105050335
CARD16_chr11_105036563_105050335	0/0	t0002	239	1	1	0	0	0	0	copy fasta	CARD16	chr11	105036563	105050335
CARD18_chr11_105132714_105144769	1/1	t0001	429	426	94	79	193	14	44	copy fasta	CARD18	chr11	105132714	105144769
CARD18_chr11_105132714_105144769	0/0	t0002	429	3	1	2	0	0	0	copy fasta	CARD18	chr11	105132714	105144769
CARD18_chr11_105132714_105144769	0/0	t0003	429	1	1	0	0	0	0	copy fasta	CARD18	chr11	105132714	105144769
CARD18_chr11_105132714_105144769	0/0	t0004	429	1	0	0	1	0	0	copy fasta	CARD18	chr11	105132714	105144769
CARD18_chr11_105132714_105144769	0/0	t0005	429	1	0	1	0	0	0	copy fasta	CARD18	chr11	105132714	105144769
CARD19_chr9_93091217_93118283	1/0	t0001	306	169	62	13	68	2	23	copy fasta	CARD19	chr9	93091217	93118283