JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CARD19_chr9_93091217_93118283	0/1	t0002	306	163	21	44	78	6	13	copy fasta	CARD19	chr9	93091217	93118283
CARD19_chr9_93091217_93118283	0/0	t0003	306	24	7	10	0	4	3	copy fasta	CARD19	chr9	93091217	93118283
CARD19_chr9_93091217_93118283	0/0	t0004	283	2	0	1	0	0	1	copy fasta	CARD19	chr9	93091217	93118283
CARD6_chr5_40836367_40860354	0/1	t0001	925	218	64	35	95	3	20	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	1/0	t0002	925	161	6	36	86	12	20	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	t0003	925	17	16	1	0	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	t0004	925	12	0	0	12	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	t0005	925	11	0	5	0	3	3	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	t0006	925	7	3	4	0	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	t0007	925	3	3	0	0	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	t0008	921	3	0	0	3	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	t0009	925	3	2	1	0	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	t0010	925	3	3	0	0	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	t0011	925	1	0	0	0	0	1	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	t0012	925	1	1	0	0	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD8_chr19_48203086_48260912	0/1	t0001	3998	67	12	9	32	5	8	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	1/0	t0002	3997	41	2	6	29	0	3	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0003	3996	41	5	11	14	2	9	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0004	3998	30	2	2	18	3	5	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0005	3994	22	2	11	8	0	1	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0006	3994	14	0	3	9	1	1	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0007	3998	12	5	1	6	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0008	3995	9	6	3	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0009	3996	8	8	0	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0010	3999	8	1	0	3	0	4	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0011	3997	7	2	0	5	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0012	3997	6	6	0	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0013	3999	5	0	1	4	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0014	3995	5	1	3	1	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0015	3997	5	2	1	2	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0016	3996	5	2	0	0	0	3	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0017	3997	4	4	0	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0018	3997	4	0	0	4	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0019	3996	4	2	2	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0020	3998	4	2	2	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0021	3997	3	1	2	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0022	3996	3	3	0	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0023	3994	3	0	3	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0024	3996	3	1	2	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0025	3788	2	0	0	2	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0026	3996	2	2	0	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0027	3994	2	0	0	2	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0028	3995	2	0	1	1	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0029	3995	2	2	0	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0030	3998	2	2	0	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0031	3997	2	1	0	0	0	1	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0032	3995	2	2	0	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0033	3998	1	1	0	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0034	3997	1	0	1	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	t0035	3998	1	0	0	1	0	0	copy fasta	CARD8	chr19	48203086	48260912